public void GetChromosomeList()
{
var readStream = new BlockGZipStream(ResourceUtilities.GetReadStream(Resources.TopPath("Clinvar20150901.json.gz")), CompressionMode.Decompress);
var indexStream = ResourceUtilities.GetReadStream(Resources.TopPath("Clinvar20150901.json.gz.jsi"));
var outStream = new MemoryStream();
using (var writer = new StreamWriter(outStream, Encoding.UTF8, 512, true))
using (var qp = new QueryProcessor(new StreamReader(readStream), indexStream, writer))
{
writer.NewLine = "\r\n";
qp.ListChromosomesAndSections();
}
Assert.NotEqual(0, outStream.Length);
outStream.Position = 0;
using (var reader = new StreamReader(outStream))
{
string chromList = reader.ReadToEnd();
Assert.Equal("1\r\n2\r\n3\r\n4\r\n5\r\n6\r\n7\r\n8\r\n9\r\n10\r\n11\r\n12\r\n13\r\n14\r\n15\r\n16\r\n17\r\n18\r\n19\r\n20\r\n21\r\nX\r\nY\r\nheader\r\npositions\r\ngenes\r\n", chromList);
}
}