private void thresholdEntry_ThresholdChanged(object sender, EventArgs e)
{
if (OA == null)
{
return;
}
OA.SetPositiveThreshold(thresholdEntry.PositiveThreshold, out bool negChanged);
OA.SetNegativeThreshold(thresholdEntry.NegativeThreshold, out bool posChanged2);
ColorGridsandDrawMotifs();
mdMatrix.SetThreshold(OA.PositiveThreshold, OA.NegativeThreshold);
}
private void Run()
{
string[,] values = new string[dgQuantification.RowCount, dgQuantification.ColumnCount];
for (int iRow = 0; iRow < dgQuantification.RowCount; iRow++)
{
for (int iCol = 0; iCol < dgQuantification.ColumnCount; iCol++)
{
values[iRow, iCol] = dgQuantification[iCol, iRow].Value?.ToString() ?? "";
}
}
string error = "";
bool xPossible = true, yPossible = true;
OPALArray.CheckPermutationAxis(values, ref xPossible, ref yPossible);
if (xPossible && yPossible)
{
PermutationXAxis = cbPermutationXAxis.Checked;
}
else if (xPossible)
{
PermutationXAxis = true;
cbPermutationXAxis.Checked = true;
}
else if (yPossible)
{
PermutationXAxis = false;
cbPermutationXAxis.Checked = false;
}
if (!xPossible && !yPossible)
{
MessageBox.Show("Please make sure one the axes have OPAL array (each amino acid has to exist at most once)", Analyzer.ProgramName);
return;
}
;
OA = new OPALArray(values, PermutationXAxis, cbYAxisTopToBottom.Checked, out error);
OA.SetPositiveThreshold(thresholdEntry.PositiveThreshold, out bool negChanged);
OA.SetNegativeThreshold(thresholdEntry.NegativeThreshold, out bool posChanged2);
if (error != "")
{
MessageBox.Show(error, Analyzer.ProgramName);
return;
}
GridUtil.LoadNumericMatrixToGrid(dgNormalized, OA.NormalizedMatrix, 1, 1);
FillGridHeaders(dgNormalized);
ColorGridsandDrawMotifs();
DrawColorMatrix();
}