Exemplo n.º 1
0
        private void linkLoadFromFile_LinkClicked(object sender, LinkLabelLinkClickedEventArgs e)
        {
            try
            {
                DialogResult dlg = dlgOpenQuantification.ShowDialog();
                if (dlg != DialogResult.OK)
                {
                    return;
                }
                SetText(dlgOpenProject);
                string filename = dlgOpenQuantification.FileName;

                if (System.IO.File.Exists(filename))
                {
                    OA = FileUtil.ReadOPALArrayQuantificationData(filename);
                    thresholdEntry.SetInitialValues(OA.GetPositiveThreshold(), OA.GetNegativeThreshold());

                    cbPermutationXAxis.Checked = PermutationXAxis;
                    cbYAxisTopToBottom.Checked = OA.PositionYAxisTopToBottom;

                    if (OA.QuantificationMatrix != null)
                    {
                        LoadQuantificationFromOPALArrayToGrid();
                    }
                    GridUtil.LoadNumericMatrixToGrid(dgNormalized, OA.NormalizedMatrix, 1, 1);
                    FillGridHeaders(dgNormalized);
                    Run();
                    ColorGridsandDrawMotifs();
                }
            }
            catch
            {
                MessageBox.Show("There is a problem with loading the quantification file.\r\nPlease make sure the quantification data is the only data in the loaded file.\r\n", Application.ProductName);
            }
        }
Exemplo n.º 2
0
        private void LoadProject()
        {
            try
            {
                DialogResult dlg = dlgOpenProject.ShowDialog();
                if (dlg != DialogResult.OK)
                {
                    return;
                }
                SetText(dlgOpenProject);
                string filename = dlgOpenProject.FileName;
                try
                {
                    OA = OPALArray.ReadFromFile(filename);
                }
                catch
                {
                    MessageBox.Show("The file may be corrupted or not a valid PeSA project file.", Analyzer.ProgramName);
                }
                thresholdEntry.SetInitialValues(OA.GetPositiveThreshold(), OA.GetNegativeThreshold());
                rbMaxValue.Checked     = OA.NormMode == NormalizationMode.Max;
                rbPerRowColumn.Checked = OA.NormMode != NormalizationMode.Max;

                cbPermutationXAxis.Checked = PermutationXAxis;
                cbYAxisTopToBottom.Checked = OA.PositionYAxisTopToBottom;

                if (OA.QuantificationMatrix != null)
                {
                    LoadQuantificationFromOPALArrayToGrid();
                }
                GridUtil.LoadNumericMatrixToGrid(dgNormalized, OA.NormalizedMatrix, 1, 1);
                FillGridHeaders(dgNormalized);

                bool gridOK = ColorGridsandDrawMotifs();//also creates/draws the motif

                eNotes.Text          = OA.Notes;
                imageReference.Image = null;
                try
                {
                    Image img = FileUtil.Base64ToImage(OA.ImageStr);
                    imageReference.Image = img;
                }
                catch { }

                DrawColorMatrix();
                if (!gridOK)
                {
                    MessageBox.Show("There is a problem in loading the file. It is highly recommended to re-run the analysis.", Analyzer.ProgramName);
                }
            }
            catch
            {
                MessageBox.Show("There is a problem in loading the file. It is highly recommended to re-run the analysis.", Analyzer.ProgramName);
            }
            linkRun.Visible = true;
        }
Exemplo n.º 3
0
        private void Run()
        {
            string[,] values = new string[dgQuantification.RowCount, dgQuantification.ColumnCount];
            for (int iRow = 0; iRow < dgQuantification.RowCount; iRow++)
            {
                for (int iCol = 0; iCol < dgQuantification.ColumnCount; iCol++)
                {
                    values[iRow, iCol] = dgQuantification[iCol, iRow].Value?.ToString() ?? "";
                }
            }

            string error = "";
            bool   xPossible = true, yPossible = true;

            OPALArray.CheckPermutationAxis(values, ref xPossible, ref yPossible);
            if (xPossible && yPossible)
            {
                PermutationXAxis = cbPermutationXAxis.Checked;
            }
            else if (xPossible)
            {
                PermutationXAxis           = true;
                cbPermutationXAxis.Checked = true;
            }
            else if (yPossible)
            {
                PermutationXAxis           = false;
                cbPermutationXAxis.Checked = false;
            }
            if (!xPossible && !yPossible)
            {
                MessageBox.Show("Please make sure one the axes have OPAL array (each amino acid has to exist at most once)", Analyzer.ProgramName);
                return;
            }
            ;
            OA = new OPALArray(values, PermutationXAxis, cbYAxisTopToBottom.Checked, out error);
            OA.SetPositiveThreshold(thresholdEntry.PositiveThreshold, out bool negChanged);
            OA.SetNegativeThreshold(thresholdEntry.NegativeThreshold, out bool posChanged2);
            if (error != "")
            {
                MessageBox.Show(error, Analyzer.ProgramName);
                return;
            }
            GridUtil.LoadNumericMatrixToGrid(dgNormalized, OA.NormalizedMatrix, 1, 1);
            FillGridHeaders(dgNormalized);
            ColorGridsandDrawMotifs();
            DrawColorMatrix();
        }
Exemplo n.º 4
0
        private void btnSave_Click(object sender, EventArgs e)
        {
            dlgSaveProject.FileName = ProjectName;
            DialogResult dlg = dlgSaveProject.ShowDialog();

            if (dlg != DialogResult.OK)
            {
                return;
            }
            SetText(dlgSaveProject);
            OA.Notes    = eNotes.Text;
            OA.ImageStr = FileUtil.ImageToBase64(imageReference.Image);
            string filename = dlgSaveProject.FileName;

            if (OPALArray.SaveToFile(filename, OA))
            {
                MessageBox.Show(filename + " is saved", Analyzer.ProgramName);
            }
        }
Exemplo n.º 5
0
 private void btnLoadQuantification_Click(object sender, EventArgs e)
 {
     try
     {
         DialogResult dlg = dlgOpenQuantification.ShowDialog();
         if (dlg != DialogResult.OK)
         {
             return;
         }
         SetText(dlgOpenQuantification);
         string filename = dlgOpenQuantification.FileName;
         if (System.IO.File.Exists(filename))
         {
             OA = FileUtil.ReadOPALArrayQuantificationData(filename);
             LoadQuantificationFromOPALArrayToGrid();
         }
     }
     catch
     {
         MessageBox.Show("There is a problem with loading the quantification file.\r\nPlease make sure the quantification data is the only data in the loaded file.\r\n", Application.ProductName);
     }
 }