private IList <IGEN_SAMPLE> MakeGenomicsSamples(GenomicsOrder genOrder, IGEN_CUSTOMER genomicsCustomer)
{
IList <IGEN_SAMPLE> samples = new List <IGEN_SAMPLE>();
foreach (var genOrderProduct in genOrder.Products)
{
foreach (var genSample in genOrderProduct.Samples)
{
var sample = new IGEN_SAMPLE {
ISVALID = true
};
var sire = new IGEN_POTENTIALSIRE();
var dam = new IGEN_POTENTIALDAM();
var animal = new IGEN_ANIMAL();
sample.BARCODEID = genSample.BarcodeId;
sample.REFBARCODEID = genSample.BarcodeId;
sample.SUBSTRATE = genSample.Substrate;
sample.CASENUM = genSample.CaseNumber;
sample.COMMENTS = genSample.Comments;
sample.BATCHNUMBER = genSample.BatchNumber.SafeInt();
sire.BREED1 = genSample.SireId;
sire.BREEDASSOCIATIONID = genSample.SireRegistrationNumber;
dam.BREED1 = genSample.DamId;
dam.BREEDASSOCIATIONID = genSample.DamRegistrationNumber;
animal.ANIMAL_ID = genSample.AnimalId;
animal.BREEDASSOCIATIONID = genSample.BreedingAssociationCodeId;
animal.IGEN_CUSTOMER = genomicsCustomer;
//gak For Trinia seems to be only used on Customer
//var custBreedAssoc = customerBreedAssocs.FirstOrDefault(f =>
// f.BREEDASSOCIATIONCODE == genSample.BreedingAssociationCode);
//if (custBreedAssoc != null)
//{
// custBreedAssoc.MEMBERNUMBER = custBreedAssoc.MEMBERNUMBER;
//}
animal.ELECTRONICID = genSample.ElectronicId;
animal.SEX = genSample.SexofAnimal.FixSexValue();
animal.BREED1 = genSample.Breed1;
animal.BREED2 = genSample.Breed2;
animal.SIREGROUP = genSample.SireGroup;
animal.BIRTHDATE = genSample.BirthDate;
animal.ANIMALID2 = genSample.AnimalId2;
animal.BIRTHSTATUS = GetBirthStatus(genSample);
sample.IGEN_POTENTIALDAM.Add(dam);
sample.IGEN_POTENTIALSIRE.Add(sire);
sample.IGEN_ANIMAL = animal;
samples.Add(sample);
}
}
return(samples.ToList());
}
private void ValidationObjects(GenomicsOrder order, IGEN_CUSTOMER genomicsCustomer, IGEN_USER genomicsUser,
IGEN_LAB genomicsLab)
{
if (genomicsCustomer == null)
{
var msg = $"CustomerId ({order.CustId}) does not exists.";
_logger.Info(msg);
throw new Exception(msg);
}
if (genomicsUser == null)
{
var msg = $"User ({order.UserId}) does not exist.";
_logger.Info(msg);
throw new Exception(msg);
}
if (genomicsLab == null)
{
var msg = $"Lab Id ({_labId} does not exist.)";
_logger.Info(msg);
throw new Exception(msg);
}
}
