public void TestOperationEverything()
{
FhirClient client = new FhirClient(testEndpoint)
{
UseFormatParam = true,
PreferredFormat = ResourceFormat.Json
};
// GET operation $everything without parameters
var loc = client.TypeOperation <Patient>("everything", null, true);
Assert.IsNotNull(loc);
// POST operation $everything without parameters
loc = client.TypeOperation <Patient>("everything", null, false);
Assert.IsNotNull(loc);
// GET operation $everything with 1 parameter
// This doesn't work yet. When an operation is used with primitive types then those parameters must be appended to the url as query parameters.
// loc = client.TypeOperation<Patient>("everything", new Parameters().Add("start", new Date(2017, 10)), true);
// Assert.IsNotNull(loc);
// POST operation $everything with 1 parameter
loc = client.TypeOperation <Patient>("everything", new Parameters().Add("start", new Date(2017, 10)), false);
Assert.IsNotNull(loc);
}
public ValueSet ExpandValueSet(string valueSetID)
{
valuesetIdParameter.Value = new FhirUri(valueSetID);
var parameters = new Parameters
{
Parameter = new List <Parameters.ParameterComponent>
{
valuesetIdParameter,
}
};
return((ValueSet)client.TypeOperation <ValueSet>("expand", parameters));
}
static void TestExpand()
{
//var json = new WebClient().DownloadString("https://r4.ontoserver.csiro.au/fhir/ValueSet/$expand?url=http://snomed.info/sct?fhir_vs=ecl/%3C394658006");
// http://snomed.info/sct?fhir_vs=ecl%2F%3C394658006&count=1000&activeOnly=true
var client = new FhirClient(
"https://r4.ontoserver.csiro.au/fhir/");
var p = new Parameters()
.Add("url", new FhirUri("http://snomed.info/sct?fhir_vs=ecl/<394658006"))
.Add("count", new Integer(1000))
.Add("activeOnly", new FhirBoolean(true));
var result = client.TypeOperation <ValueSet>("expand", p, true);
}
public void Test_DeleteHistoryIndexes()
{
FhirClient clientFhir = new FhirClient(StaticTestData.FhirEndpoint(), false);
clientFhir.Timeout = 1000 * 720; // give the call a while to execute (particularly while debugging).
string PatientOneResourceId = Guid.NewGuid().ToString();
string PatientOneMRNIdentifer = Guid.NewGuid().ToString();
//Add a Patient resource by Create
Patient PatientOne = new Patient();
PatientOne.Id = PatientOneResourceId;
PatientOne.Name.Add(HumanName.ForFamily("TestPatient").WithGiven("Test"));
PatientOne.BirthDateElement = new Date("1979-09-30");
PatientOne.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, PatientOneMRNIdentifer));
PatientOne.Gender = AdministrativeGender.Unknown;
Patient PatientResult = null;
try
{
PatientResult = clientFhir.Update <Patient>(PatientOne);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on Patient resource Update: " + Exec.Message);
}
Assert.NotNull(PatientResult, "Resource create by Updated returned resource of null");
PatientResult = null;
//Update the patient again to ensure there are History indexes to delete
try
{
PatientResult = clientFhir.Update <Patient>(PatientOne);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on Patient resource Update: " + Exec.Message);
}
Assert.NotNull(PatientResult, "Resource create by Updated returned resource of null");
//------------------------------------------------------------------------------------
// ------------ Base Operation, limited types by parameters --------------------------
//------------------------------------------------------------------------------------
//Now setup to use the base operation $delete-history-indexes
//Parameter Resource
Parameters ParametersIn = new Parameters();
//ParametersIn.Id = Guid.NewGuid().ToString();
ParametersIn.Parameter = new List <Parameters.ParameterComponent>();
var ParamOne = new Parameters.ParameterComponent();
ParametersIn.Parameter.Add(ParamOne);
ParamOne.Name = "ResourceType";
ParamOne.Value = new FhirString(FHIRAllTypes.Patient.GetLiteral());
Parameters ParametersResult = null;
try
{
var ResourceResult = clientFhir.WholeSystemOperation(OperationName, ParametersIn);
ParametersResult = ResourceResult as Parameters;
}
catch (Exception Exec)
{
Assert.True(false, $"Exception thrown on Operation call to ${OperationName}: " + Exec.Message);
}
Assert.NotNull(ParametersResult, "Resource create by Updated returned resource of null");
Assert.NotNull(ParametersResult.Parameter, "ParametersResult.Parameter is null");
Assert.AreEqual(ParametersResult.Parameter.Count(), 1, "ParametersResult.Parameter contains more than one parameter.");
Assert.AreEqual(ParametersResult.Parameter[0].Name, $"{FHIRAllTypes.Patient.GetLiteral()}_TotalIndexesDeletedCount", "ParametersResult.Parameter.Name not as expected.");
Assert.IsInstanceOf <FhirDecimal>(ParametersResult.Parameter[0].Value, "ParametersResult.Parameter.Value expected FhirDecimal.");
Assert.Greater((ParametersResult.Parameter[0].Value as FhirDecimal).Value, 0, "ParametersResult.Parameter.Value expected to be greater than 0.");
ParametersResult = null;
//------------------------------------------------------------------------------------
// ------------ Resource Base Operation ALL resource ResourceType = *----------------------------------------------
//------------------------------------------------------------------------------------
//Now setup to use the base operation $delete-history-indexes
//Parameter Resource
ParametersIn = new Parameters();
ParametersIn.Id = Guid.NewGuid().ToString();
ParametersIn.Parameter = new List <Parameters.ParameterComponent>();
ParamOne = new Parameters.ParameterComponent();
ParametersIn.Parameter.Add(ParamOne);
ParamOne.Name = "ResourceType";
ParamOne.Value = new FhirString("*");
ParametersResult = null;
try
{
var ResourceResult = clientFhir.WholeSystemOperation(OperationName, ParametersIn);
ParametersResult = ResourceResult as Parameters;
}
catch (Exception Exec)
{
Assert.True(false, $"Exception thrown on Operation call to ${OperationName}: " + Exec.Message);
}
Assert.NotNull(ParametersResult, "Resource create by Updated returned resource of null");
Assert.NotNull(ParametersResult.Parameter, "ParametersResult.Parameter is null");
Assert.AreEqual(ParametersResult.Parameter.Count(), ModelInfo.SupportedResources.Count, "ParametersResult.Parameter.Count Not equal to Supported resource total.");
ParametersResult = null;
//------------------------------------------------------------------------------------
// ------------ Resource Type Operation ----------------------------------------------
//------------------------------------------------------------------------------------
//Update the patient again to ensure there are History indexes to delete
PatientResult = null;
try
{
PatientResult = clientFhir.Update <Patient>(PatientOne);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on Patient resource Update: " + Exec.Message);
}
Assert.NotNull(PatientResult, "Resource create by Updated returned resource of null");
ParametersIn = new Parameters();
ParametersIn.Id = Guid.NewGuid().ToString();
ParametersResult = null;
try
{
var ResourceResult = clientFhir.TypeOperation <Patient>(OperationName, ParametersIn);
ParametersResult = ResourceResult as Parameters;
}
catch (Exception Exec)
{
Assert.True(false, $"Exception thrown on Operation call to ${OperationName}: " + Exec.Message);
}
Assert.NotNull(ParametersResult, "Resource create by Updated returned resource of null");
Assert.NotNull(ParametersResult.Parameter, "ParametersResult.Parameter is null");
Assert.AreEqual(ParametersResult.Parameter.Count(), 1, "ParametersResult.Parameter contains more than one parameter.");
Assert.AreEqual(ParametersResult.Parameter[0].Name, $"{FHIRAllTypes.Patient.GetLiteral()}_TotalIndexesDeletedCount", "ParametersResult.Parameter.Name not as expected.");
Assert.IsInstanceOf <FhirDecimal>(ParametersResult.Parameter[0].Value, "ParametersResult.Parameter.Value expected FhirDecimal.");
Assert.Greater((ParametersResult.Parameter[0].Value as FhirDecimal).Value, 0, "ParametersResult.Parameter.Value expected to be greater than 0.");
//--- Clean Up ---------------------------------------------------------
//Clean up by deleting all Test Patients
SearchParams sp = new SearchParams().Where($"identifier={StaticTestData.TestIdentiferSystem}|");
try
{
clientFhir.Delete("Patient", sp);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on conditional delete of resource Patient: " + Exec.Message);
}
}
private List <string> GenerateDrugFilter()
{
var ecl = textBox2.Text;
const string Endpoint = "https://ontoserver.csiro.au/stu3-latest";
string ValueSetURL = "http://snomed.info/sct?fhir_vs=ecl/" + ecl;
//ExpandECL for Box2
var client = new FhirClient(Endpoint);
var url = new FhirUri(ValueSetURL);
var result = client.ExpandValueSet(url);
var ids = new List <string>();
foreach (var item in result.Expansion.Contains)
{
ids.Add(item.Code);
}
var translations = new List <string>();
foreach (var id in ids)
{
//Reverse Translate
var revsertTranslateParameters = new Parameters
{
Parameter = new List <Parameters.ParameterComponent>
{
new Parameters.ParameterComponent
{
Name = "url",
Value = new FhirUri("http://snomed.info/sct?fhir_cm=281000036105")
},
new Parameters.ParameterComponent
{
Name = "system",
Value = new FhirUri("http://snomed.info/sct")
},
new Parameters.ParameterComponent
{
Name = "code",
Value = new FhirString(id)
},
new Parameters.ParameterComponent
{
Name = "target",
Value = new FhirUri("http://snomed.info/sct")
},
new Parameters.ParameterComponent
{
Name = "reverse",
Value = new FhirBoolean(true)
}
}
};
var transResult = (Parameters)client.TypeOperation <ConceptMap>("translate", revsertTranslateParameters);
//if there's a map
//if (transResult.Parameter[0].Value.Equals("true"))
//{
foreach (var match in transResult.Parameter.Where <Parameters.ParameterComponent>(e => e.Name == "match"))
{
//var coding = match.Part.Where<Parameters.ParameterComponent>(e => e.Name == "concept");
//This workds
//var coding1 = match.Part[1].Value;
var valueCoding = match.Part.Where <Parameters.ParameterComponent>(p => p.Name.Equals("concept")).FirstOrDefault();
var coding = (Coding)valueCoding.Value;
translations.Add(coding.Code);
}
//}
}
//Expand the AMT ingredients
string AMT_ecl = "http://snomed.info/sct?fhir_vs=ecl/<<30425011000036101:<<762951001=(";
foreach (var item in translations)
{
AMT_ecl = AMT_ecl + item + " OR ";
}
//close the expression
AMT_ecl = AMT_ecl + "123456 OR 123456)";
var AMT_url = new FhirUri(AMT_ecl);
var AMTs = client.ExpandValueSet(AMT_url);
var filtered = new List <string>();
foreach (var item in AMTs.Expansion.Contains)
{
filtered.Add(item.Code);
}
return(filtered);
}
static void Main(string[] args)
{
Console.WriteLine("Hello World!");
var client = new FhirClient(Endpoint);
//var filter = new FhirString("inr");
var url = new FhirUri(ValueSetURL);
var result = client.ExpandValueSet(url);
Console.WriteLine(result.Expansion.Total + " results total");
Console.WriteLine(result.Expansion.Contains.FirstOrDefault().Display);
//var dict = VStoDictionary(result);
Console.WriteLine("Let's try translate!");
#region TRANSLATE
var revsertTranslateParameters = new Parameters
{
Parameter = new List <Parameters.ParameterComponent>
{
new Parameters.ParameterComponent
{
Name = "url",
Value = new FhirUri("http://snomed.info/sct?fhir_cm=281000036105")
},
new Parameters.ParameterComponent
{
Name = "system",
Value = new FhirUri("http://snomed.info/sct")
},
new Parameters.ParameterComponent
{
Name = "code",
Value = new FhirString("419442005")
},
new Parameters.ParameterComponent
{
Name = "target",
Value = new FhirUri("http://snomed.info/sct")
},
new Parameters.ParameterComponent
{
Name = "reverse",
Value = new FhirBoolean(true)
}
}
};
var transResult = (Parameters)client.TypeOperation <ConceptMap>("translate", revsertTranslateParameters);
//
Console.WriteLine(transResult.Parameter.First().Name + " : " + transResult.Parameter.First().Value.ToString());
foreach (var match in transResult.Parameter.Where <Parameters.ParameterComponent>(e => e.Name == "match"))
{
//var coding = match.Part.Where<Parameters.ParameterComponent>(e => e.Name == "concept");
//This workds
//var coding1 = match.Part[1].Value;
var valueCoding = match.Part.Where <Parameters.ParameterComponent>(p => p.Name.Equals("concept")).FirstOrDefault();
var coding = (Coding)valueCoding.Value;
Console.WriteLine(coding.Code + " " + coding.Display);
}
#endregion TRANSLATE
#region search
var substanceECL = "http://snomed.info/sct?fhir_vs=ecl/<<105590001";
var resultSizeLimit = 5;
var searchFilter = "morphi";
var Newresult = client.ExpandValueSet(new FhirUri(substanceECL), new FhirString(searchFilter));
var x = Newresult.Expansion.Contains;
foreach (var item in x)
{
Console.WriteLine(item.Code + " | " + item.Display);
}
#endregion search
Console.WriteLine("Done");
Console.ReadKey();
}
