public void xcaliburSimpleTest1()
{
Run run = new XCaliburRun(xcaliburTestfile);
Project.getInstance().RunCollection.Add(run);
ScanSetCollectionCreator scanSetCollectionCreator = new ScanSetCollectionCreator(run, 6000, 6020, 1, 1);
scanSetCollectionCreator.Create();
Task msGenerator = new GenericMSGenerator();
Task msPeakDetector = new DeconToolsPeakDetector();
Task thrashDecon = new HornDeconvolutor();
Task exporter = new BasicIsosResultSqliteExporter("..\\..\\TestFiles\\tempOutput.db3");
Project.getInstance().TaskCollection.TaskList.Add(msGenerator);
Project.getInstance().TaskCollection.TaskList.Add(msPeakDetector);
Project.getInstance().TaskCollection.TaskList.Add(thrashDecon);
Project.getInstance().TaskCollection.TaskList.Add(exporter);
TaskController controller = new BasicTaskController(Project.getInstance().TaskCollection);
controller.Execute(Project.getInstance().RunCollection);
}
public static IsosResultExporter CreateIsosExporter(Globals.ResultType resultType, Globals.ExporterType exporterType, string outputFileName)
{
IsosResultExporter isosExporter;
switch (resultType)
{
case Globals.ResultType.BASIC_TRADITIONAL_RESULT:
switch (exporterType)
{
case Globals.ExporterType.Text:
isosExporter = new BasicIsosResultTextFileExporter(outputFileName, TriggerToExportValue);
break;
case Globals.ExporterType.Sqlite:
isosExporter = new BasicIsosResultSqliteExporter(outputFileName, TriggerToExportValue);
break;
default:
isosExporter = new BasicIsosResultTextFileExporter(outputFileName, TriggerToExportValue);
break;
}
break;
case Globals.ResultType.UIMF_TRADITIONAL_RESULT:
switch (exporterType)
{
case Globals.ExporterType.Text:
isosExporter = new UIMFIsosResultTextFileExporter(outputFileName, TriggerToExportValue);
break;
case Globals.ExporterType.Sqlite:
isosExporter = new UIMFIsosResultSqliteExporter(outputFileName, TriggerToExportValue);
break;
default:
isosExporter = new UIMFIsosResultTextFileExporter(outputFileName, TriggerToExportValue);
break;
}
break;
case Globals.ResultType.IMS_TRADITIONAL_RESULT:
switch (exporterType)
{
case Globals.ExporterType.Text:
isosExporter = new IMFIsosResult_TextFileExporter(outputFileName, TriggerToExportValue);
break;
case Globals.ExporterType.Sqlite:
throw new NotImplementedException();
default:
isosExporter = new IMFIsosResult_TextFileExporter(outputFileName, TriggerToExportValue);
break;
}
break;
case Globals.ResultType.O16O18_TRADITIONAL_RESULT:
switch (exporterType)
{
case Globals.ExporterType.Text:
isosExporter = new O16O18IsosResultTextFileExporter(outputFileName, TriggerToExportValue);
break;
case Globals.ExporterType.Sqlite:
throw new NotImplementedException();
default:
isosExporter = new IMFIsosResult_TextFileExporter(outputFileName, TriggerToExportValue);
break;
}
break;
case Globals.ResultType.BASIC_TARGETED_RESULT:
throw new ApplicationException("Cannot create IsosExporter for Targeted-type results");
case Globals.ResultType.O16O18_TARGETED_RESULT:
throw new ApplicationException("Cannot create IsosExporter for Targeted-type results");
case Globals.ResultType.N14N15_TARGETED_RESULT:
throw new ApplicationException("Cannot create IsosExporter for Targeted-type results");
case Globals.ResultType.DEUTERATED_TARGETED_RESULT:
throw new ApplicationException("Cannot create IsosExporter for Targeted-type results");
default:
throw new ApplicationException("Cannot create IsosExporter for this type of Result: " + resultType);
}
return(isosExporter);
}
