public void xcaliburSimpleTest1() { Run run = new XCaliburRun(xcaliburTestfile); Project.getInstance().RunCollection.Add(run); ScanSetCollectionCreator scanSetCollectionCreator = new ScanSetCollectionCreator(run, 6000, 6020, 1, 1); scanSetCollectionCreator.Create(); Task msGenerator = new GenericMSGenerator(); Task msPeakDetector = new DeconToolsPeakDetector(); Task thrashDecon = new HornDeconvolutor(); Task exporter = new BasicIsosResultSqliteExporter("..\\..\\TestFiles\\tempOutput.db3"); Project.getInstance().TaskCollection.TaskList.Add(msGenerator); Project.getInstance().TaskCollection.TaskList.Add(msPeakDetector); Project.getInstance().TaskCollection.TaskList.Add(thrashDecon); Project.getInstance().TaskCollection.TaskList.Add(exporter); TaskController controller = new BasicTaskController(Project.getInstance().TaskCollection); controller.Execute(Project.getInstance().RunCollection); }
public static IsosResultExporter CreateIsosExporter(Globals.ResultType resultType, Globals.ExporterType exporterType, string outputFileName) { IsosResultExporter isosExporter; switch (resultType) { case Globals.ResultType.BASIC_TRADITIONAL_RESULT: switch (exporterType) { case Globals.ExporterType.Text: isosExporter = new BasicIsosResultTextFileExporter(outputFileName, TriggerToExportValue); break; case Globals.ExporterType.Sqlite: isosExporter = new BasicIsosResultSqliteExporter(outputFileName, TriggerToExportValue); break; default: isosExporter = new BasicIsosResultTextFileExporter(outputFileName, TriggerToExportValue); break; } break; case Globals.ResultType.UIMF_TRADITIONAL_RESULT: switch (exporterType) { case Globals.ExporterType.Text: isosExporter = new UIMFIsosResultTextFileExporter(outputFileName, TriggerToExportValue); break; case Globals.ExporterType.Sqlite: isosExporter = new UIMFIsosResultSqliteExporter(outputFileName, TriggerToExportValue); break; default: isosExporter = new UIMFIsosResultTextFileExporter(outputFileName, TriggerToExportValue); break; } break; case Globals.ResultType.IMS_TRADITIONAL_RESULT: switch (exporterType) { case Globals.ExporterType.Text: isosExporter = new IMFIsosResult_TextFileExporter(outputFileName, TriggerToExportValue); break; case Globals.ExporterType.Sqlite: throw new NotImplementedException(); default: isosExporter = new IMFIsosResult_TextFileExporter(outputFileName, TriggerToExportValue); break; } break; case Globals.ResultType.O16O18_TRADITIONAL_RESULT: switch (exporterType) { case Globals.ExporterType.Text: isosExporter = new O16O18IsosResultTextFileExporter(outputFileName, TriggerToExportValue); break; case Globals.ExporterType.Sqlite: throw new NotImplementedException(); default: isosExporter = new IMFIsosResult_TextFileExporter(outputFileName, TriggerToExportValue); break; } break; case Globals.ResultType.BASIC_TARGETED_RESULT: throw new ApplicationException("Cannot create IsosExporter for Targeted-type results"); case Globals.ResultType.O16O18_TARGETED_RESULT: throw new ApplicationException("Cannot create IsosExporter for Targeted-type results"); case Globals.ResultType.N14N15_TARGETED_RESULT: throw new ApplicationException("Cannot create IsosExporter for Targeted-type results"); case Globals.ResultType.DEUTERATED_TARGETED_RESULT: throw new ApplicationException("Cannot create IsosExporter for Targeted-type results"); default: throw new ApplicationException("Cannot create IsosExporter for this type of Result: " + resultType); } return(isosExporter); }