public void ShowAssociateProteinsDlg()
{
using (var associateFasta = new AssociateProteinsDlg(SkylineWindow))
{
associateFasta.ShowDialog(SkylineWindow);
}
}
/// <summary>
/// tests the form
/// makes sure correct number of matches were found
/// unchecks all boxes to make sure apply button disables
/// </summary>
private void TestDialog(AssociateProteinsDlg dlg, ImportType type)
{
int initialPeptideCount = SkylineWindow.Document.PeptideCount;
RunUI(() =>
{
var items = dlg.CheckboxListMatches.Items.Cast <object>().Select(item => item.ToString()).ToArray();
Assert.AreEqual(5, dlg.CheckboxListMatches.CheckedItems.Count); // 5 items checked
Assert.AreEqual(5, items.Length);
Assert.IsTrue(dlg.ApplyButton.Enabled);
for (var i = 0; i < items.Length; i++)
{
dlg.CheckboxListMatches.SetItemCheckState(i, CheckState.Unchecked);
}
Assert.IsFalse(dlg.ApplyButton.Enabled);
Assert.AreEqual(0, dlg.CheckboxListMatches.CheckedItems.Count); // 0 items checked
for (var i = 0; i < items.Length; i++)
{
if (i == 0 || i == 1 || i == 2)
{
continue;
}
dlg.CheckboxListMatches.SetItemCheckState(i, CheckState.Checked);
}
Assert.AreEqual(2, dlg.CheckboxListMatches.CheckedItems.Count); // 2 items checked
Assert.IsTrue(dlg.ApplyButton.Enabled);
});
OkDialog(dlg, dlg.ApplyButton.PerformClick);
RunUI(() =>
{
// +4 because peptides that associate with two proteins get duplicated and there are 4 in this test data file
Assert.AreEqual(initialPeptideCount + 4, SkylineWindow.Document.PeptideCount);
List <PeptideGroupDocNode> proteins = new List <PeptideGroupDocNode>();
List <PeptideGroupDocNode> peptideGroups = new List <PeptideGroupDocNode>();
foreach (var docNode in SkylineWindow.Document.MoleculeGroups)
{
if (docNode.IsProtein)
{
proteins.Add(docNode);
}
else
{
peptideGroups.Add(docNode);
}
}
Assert.AreEqual(2, proteins.Count);
Assert.AreEqual(5, peptideGroups.Count);
Assert.AreEqual(proteins[0].Children.Count, proteins[1].Children.Count);
for (var i = 0; i < proteins[0].Children.Count; i++)
{
Assert.AreEqual(proteins[0].Peptides.ElementAt(i).ToString(),
proteins[0].Peptides.ElementAt(i).ToString());
}
});
var dlg2 = ShowDialog <AssociateProteinsDlg>(SkylineWindow.ShowAssociateProteinsDlg);
if (type == ImportType.FASTA)
{
RunUI(() => dlg2.UseFastaFile(_fastaFile));
}
else
{
RunUI(dlg2.UseBackgroundProteome);
}
RunUI(() =>
{
var items = dlg2.CheckboxListMatches.Items.Cast <object>().Select(item => item.ToString()).ToArray();
Assert.AreEqual(3, dlg2.CheckboxListMatches.CheckedItems.Count); // 3 items checked
Assert.AreEqual(3, items.Length);
Assert.IsTrue(dlg2.ApplyButton.Enabled);
});
OkDialog(dlg2, dlg2.ApplyChanges);
RunUI(() => {
List <PeptideGroupDocNode> proteins = new List <PeptideGroupDocNode>();
List <PeptideGroupDocNode> nonProteins = new List <PeptideGroupDocNode>();
foreach (var docNode in SkylineWindow.Document.MoleculeGroups)
{
if (docNode.IsProtein)
{
proteins.Add(docNode);
}
else
{
nonProteins.Add(docNode);
}
}
Assert.AreEqual(5, proteins.Count);
Assert.AreEqual(2, nonProteins.Count);
Assert.AreEqual(initialPeptideCount + 4, SkylineWindow.Document.PeptideCount);
});
}
