StoichiometryMath clone()
{
IntPtr cPtr = libsbmlPINVOKE.StoichiometryMath_clone(swigCPtr);
StoichiometryMath ret = (cPtr == IntPtr.Zero) ? null : new StoichiometryMath(cPtr, true);
return(ret);
}
StoichiometryMath createStoichiometryMath()
{
global::System.IntPtr cPtr = libsbmlPINVOKE.SpeciesReference_createStoichiometryMath(swigCPtr);
StoichiometryMath ret = (cPtr == global::System.IntPtr.Zero) ? null : new StoichiometryMath(cPtr, false);
return(ret);
}
public void setUp()
{
D = new StoichiometryMath(2,4);
if (D == null);
{
}
}
StoichiometryMath(StoichiometryMath orig) : this(libsbmlPINVOKE.new_StoichiometryMath__SWIG_2(StoichiometryMath.getCPtr(orig)), true)
{
if (libsbmlPINVOKE.SWIGPendingException.Pending)
{
throw libsbmlPINVOKE.SWIGPendingException.Retrieve();
}
}
internal static HandleRef getCPtrAndDisown(StoichiometryMath obj)
{
HandleRef ptr = new HandleRef(null, IntPtr.Zero);
if (obj != null)
{
ptr = obj.swigCPtr;
obj.swigCMemOwn = false;
}
return(ptr);
}
public void test_StoichiometryMath_createWithNS()
{
XMLNamespaces xmlns = new XMLNamespaces();
xmlns.add( "http://www.sbml.org", "testsbml");
SBMLNamespaces sbmlns = new SBMLNamespaces(2,1);
sbmlns.addNamespaces(xmlns);
StoichiometryMath object1 = new StoichiometryMath(sbmlns);
assertTrue( object1.getTypeCode() == libsbml.SBML_STOICHIOMETRY_MATH );
assertTrue( object1.getMetaId() == "" );
assertTrue( object1.getNotes() == null );
assertTrue( object1.getAnnotation() == null );
assertTrue( object1.getLevel() == 2 );
assertTrue( object1.getVersion() == 1 );
assertTrue( object1.getNamespaces() != null );
assertTrue( object1.getNamespaces().getLength() == 2 );
object1 = null;
}
internal static HandleRef getCPtr(StoichiometryMath obj)
{
return (obj == null) ? new HandleRef(null, IntPtr.Zero) : obj.swigCPtr;
}
/**
* Copy constructor; creates a copy of this StoichiometryMath.
*
* @param orig the object to copy.
*/
public StoichiometryMath(StoichiometryMath orig)
: this(libsbmlPINVOKE.new_StoichiometryMath__SWIG_2(StoichiometryMath.getCPtr(orig)), true)
{
if (libsbmlPINVOKE.SWIGPendingException.Pending) throw libsbmlPINVOKE.SWIGPendingException.Retrieve();
}
public void test_internal_consistency_check_99905_stoichmath()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
StoichiometryMath sm = new StoichiometryMath(2,4);
Model m = d.createModel();
d.setLevelAndVersion(2,2,false);
Species s = m.createSpecies();
s.setId("s");
Compartment c = m.createCompartment();
c.setId("c");
s.setCompartment("c");
Reaction r = m.createReaction();
r.setId("r");
SpeciesReference sr = r.createProduct();
sr.setSpecies("s");
sm.setSBOTerm(5);
sr.setStoichiometryMath(sm);
errors = d.checkInternalConsistency();
assertTrue( errors == 0 );
d = null;
}
public void test_StoichiometryMath()
{
StoichiometryMath sm = new StoichiometryMath(2,4);
assertEquals( true, sm.hasRequiredAttributes() );
sm = null;
}
public void test_SpeciesReference_setStoichiometryMath6()
{
StoichiometryMath sm = new StoichiometryMath(2,1);
int i = sr.setStoichiometryMath(sm);
assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH );
assertEquals( false, sr.isSetStoichiometryMath() );
sm = null;
}
public void test_SpeciesReference_setStoichiometryMath5()
{
SpeciesReference sr1 = new SpeciesReference(1,2);
StoichiometryMath sm = new StoichiometryMath(2,4);
ASTNode math = new ASTNode(libsbml.AST_TIMES);
ASTNode a = new ASTNode();
ASTNode b = new ASTNode();
a.setName( "a");
b.setName( "b");
math.addChild(a);
math.addChild(b);
sm.setMath(math);
int i = sr1.setStoichiometryMath(sm);
assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE );
assertEquals( false, sr1.isSetStoichiometryMath() );
sm = null;
sr1 = null;
}
public void test_SpeciesReference_setStoichiometryMath4()
{
StoichiometryMath sm = new StoichiometryMath(2,4);
ASTNode math = null;
sm.setMath(math);
int i = sr.setStoichiometryMath(sm);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertEquals( true, sr.isSetStoichiometryMath() );
assertTrue( sr.getStoichiometry() == 1 );
i = sr.unsetStoichiometryMath();
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertEquals( false, sr.isSetStoichiometryMath() );
sm = null;
}
public void test_SpeciesReference_setStoichiometryMath2()
{
StoichiometryMath sm = new StoichiometryMath(2,4);
ASTNode math = new ASTNode(libsbml.AST_TIMES);
ASTNode a = new ASTNode();
a.setName( "a");
math.addChild(a);
sm.setMath(math);
int i = sr.setStoichiometryMath(sm);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertEquals( true, sr.isSetStoichiometryMath() );
sm = null;
}
internal static HandleRef getCPtrAndDisown(StoichiometryMath obj)
{
HandleRef ptr = new HandleRef(null, IntPtr.Zero);
if (obj != null)
{
ptr = obj.swigCPtr;
obj.swigCMemOwn = false;
}
return ptr;
}
public void test_StoichiometryMath_parent_add()
{
StoichiometryMath m = new StoichiometryMath(2,4);
SpeciesReference sr = new SpeciesReference(2,4);
sr.setStoichiometryMath(m);
m = null;
assertTrue( sr == sr.getStoichiometryMath().getParentSBMLObject() );
sr = null;
}
public void test_SpeciesReference_setStoichiometryMath()
{
ASTNode math = libsbml.parseFormula("k3 / k2");
StoichiometryMath stoich = new StoichiometryMath(2,4);
stoich.setMath(math);
StoichiometryMath math1;
string formula;
SR.setStoichiometryMath(stoich);
math1 = SR.getStoichiometryMath();
assertTrue( math1 != null );
formula = libsbml.formulaToString(math1.getMath());
assertTrue( formula != null );
assertTrue(( "k3 / k2" == formula ));
assertEquals( true, SR.isSetStoichiometryMath() );
}
public void test_StoichiometryMath_constructor()
{
SBase s;
try
{
s = new StoichiometryMath(2,1);
s = new StoichiometryMath(2,2);
s = new StoichiometryMath(2,3);
s = new StoichiometryMath(2,4);
s = new StoichiometryMath(SN21);
s = new StoichiometryMath(SN22);
s = new StoichiometryMath(SN23);
s = new StoichiometryMath(SN24);
}
catch (SBMLConstructorException e)
{
s = null;
}
assertTrue(s != null);
string msg = "";
try
{
s = new StoichiometryMath(1,1);
}
catch (SBMLConstructorException e)
{
msg = e.Message;
}
assertTrue(msg == ErrMsg);
msg = "";
try
{
s = new StoichiometryMath(1,2);
}
catch (SBMLConstructorException e)
{
msg = e.Message;
}
assertTrue(msg == ErrMsg);
msg = "";
try
{
s = new StoichiometryMath(SN11);
}
catch (SBMLConstructorException e)
{
msg = e.Message;
}
assertTrue(msg == ErrMsg);
msg = "";
try
{
s = new StoichiometryMath(SN12);
}
catch (SBMLConstructorException e)
{
msg = e.Message;
}
assertTrue(msg == ErrMsg);
try
{
s = new StoichiometryMath(99,99);
}
catch (SBMLConstructorException e)
{
msg = e.Message;
}
assertTrue(msg == ErrMsg);
}
/**
* Sets the 'stoichiometryMath' subelement of this SpeciesReference.
*
* The Abstract Syntax Tree in @p math is copied.
*
* In SBML Level 2, product and reactant stoichiometries can be specified
* using <em>either</em> 'stoichiometry' or 'stoichiometryMath' in a
* SpeciesReference object. The former is to be used when a
* stoichiometry is simply a scalar number, while the latter is for
* occasions when it needs to be a rational number or it needs to
* reference other mathematical expressions. The 'stoichiometry'
* attribute is of type @c double and should contain values greater than
* zero (@c 0). The 'stoichiometryMath' element is implemented as an
* element containing a MathML expression. These two are mutually
* exclusive; only one of 'stoichiometry' or 'stoichiometryMath' should
* be defined in a given SpeciesReference instance. When neither the
* attribute nor the element is present, the value of 'stoichiometry' in
* the SpeciesReference instance defaults to @c 1. For maximum
* interoperability between different software tools, the 'stoichiometry'
* attribute should be used in preference to 'stoichiometryMath' when a
* species' stoichiometry is a simple scalar number (integer or
* decimal).
*
* In SBML Level 3, there is no StoichiometryMath, and SpeciesReference
* objects have only the 'stoichiometry' attribute.
*
* @param math the StoichiometryMath expression that is to be copied as the
* content of the 'stoichiometryMath' subelement.
*
* @note In SBML Level 2, the 'stoichiometry' attribute of this
* SpeciesReference object will be unset (isSetStoichiometry() will
* return @c false although getStoichiometry() will return @c 1.0) if the
* given math is not null because the 'stoichiometry' attribute and the
* stoichiometryMath' subelement are mutually exclusive.
*
* @return integer value indicating success/failure of the
* function. The possible values
* returned by this function are:
* @li @link libsbmlcs#LIBSBML_OPERATION_SUCCESS LIBSBML_OPERATION_SUCCESS@endlink
* @li @link libsbmlcs#LIBSBML_UNEXPECTED_ATTRIBUTE LIBSBML_UNEXPECTED_ATTRIBUTE@endlink
* @li @link libsbmlcs#LIBSBML_LEVEL_MISMATCH LIBSBML_LEVEL_MISMATCH@endlink
* @li @link libsbmlcs#LIBSBML_VERSION_MISMATCH LIBSBML_VERSION_MISMATCH@endlink
*/
public int setStoichiometryMath(StoichiometryMath math)
{
int ret = libsbmlPINVOKE.SpeciesReference_setStoichiometryMath(swigCPtr, StoichiometryMath.getCPtr(math));
return ret;
}
public void test_StoichiometryMath()
{
StoichiometryMath sm = new StoichiometryMath(2,4);
assertEquals( false, (sm.hasRequiredElements()) );
sm.setMath(libsbml.parseFormula("ar"));
assertEquals( true, sm.hasRequiredElements() );
sm = null;
}
public void tearDown()
{
D = null;
}
internal static HandleRef getCPtr(StoichiometryMath obj)
{
return((obj == null) ? new HandleRef(null, IntPtr.Zero) : obj.swigCPtr);
}
int setStoichiometryMath(StoichiometryMath math)
{
int ret = libsbmlPINVOKE.SpeciesReference_setStoichiometryMath(swigCPtr, StoichiometryMath.getCPtr(math));
return(ret);
}
public void test_StoichiometryMath_ancestor_add()
{
StoichiometryMath m = new StoichiometryMath(2,4);
SpeciesReference sr = new SpeciesReference(2,4);
sr.setStoichiometryMath(m);
m = null;
StoichiometryMath obj = sr.getStoichiometryMath();
assertTrue( obj.getAncestorOfType(libsbml.SBML_SPECIES_REFERENCE) == sr );
assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == null );
assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
sr = null;
}
