private void Abstract_Load(object sender, EventArgs e)
{
this.Text = name;
if (id == null)
{
abstractBox.Text = "There were no abstracts found";
return;
}
string datapage = EutilsURLBuilder.getFile("pubmed", id, "text", "abstract");
System.Net.WebRequest request = WebRequest.Create(datapage);
WebResponse response;
try
{
response = request.GetResponse();
}
catch
{
abstractBox.Text = "There were errors accessing the abstract page.";
return;
}
Stream dataStream = response.GetResponseStream();
StreamReader reader = new StreamReader(dataStream);
string abr = reader.ReadToEnd();
abstractBox.Text = abr.Replace("\n", "\r\n");
reader.Close();
response.Close();
}
private void Get_Page(string id)
{
// get page from ID
string datapage = EutilsURLBuilder.getFile("nucleotide", id, "gb", "xml");
Console.WriteLine(datapage);
WebRequest request = WebRequest.Create(datapage);
WebResponse response;
try
{
response = request.GetResponse();
}
catch
{
Console.WriteLine("There was an error accessing the web utilities.");
return;
}
Stream dataStream = response.GetResponseStream();
StreamReader reader = new StreamReader(dataStream);
string responseFromServer = reader.ReadToEnd();
Console.WriteLine(responseFromServer);
reader.Close();
response.Close();
// get name & location & put in vector
prevSEQ = curSEQ;
curSEQ = new Sequence(new XmlTextReader(new StringReader(responseFromServer)));
listitems.Clear();
foreach (Sequence.feature feat in curSEQ.featurelist)
{
listitems.Add(feat.name);
}
featureListBox.DataSource = listitems;
SetTitles();
graphstart = 1;
viewer.On();
isSeqView = true;
Refresh();
}
private void get_page_Click(object sender, EventArgs e)
{
viewer.Off();
isSeqView = false;
Control[] boxArray = { Accession, Organism, Feature_key, dropDown, All_fields };
WebRequest id_request = WebRequest.Create(EutilsURLBuilder.makeQueryURL(boxArray, "nucleotide", 30));
WebResponse id_response = null;
try {
id_response = id_request.GetResponse();
}
catch {
Console.WriteLine("There was an error accessing the web utilities.");
return;
}
Stream id_dataStream = id_response.GetResponseStream();
StreamReader id_reader = new StreamReader(id_dataStream);
string id_responseFromServer = id_reader.ReadToEnd();
id_reader.Close();
id_response.Close();
Match id_matches = Regex.Match(id_responseFromServer, "<Id>(\\d+)</Id>");
XmlTextReader id_read = new XmlTextReader(new StringReader(id_responseFromServer));
string thisName = "";
List <string> ids = new List <string>();
while (id_read.Read())
{
if (id_read.NodeType == XmlNodeType.Element)
{
thisName = id_read.Name;
}
else if (id_read.NodeType == XmlNodeType.Text && thisName == "Id")
{
ids.Add(id_read.Value);
}
else if (id_read.NodeType == XmlNodeType.Text && thisName == "ERROR")
{
Console.WriteLine("There was an error accessing the web utilities.");
}
}
WebRequest sum_request = WebRequest.Create(EutilsURLBuilder.getSummary("nucleotide", ids));
WebResponse sum_response = null;
try
{
sum_response = sum_request.GetResponse();
}
catch
{
Console.WriteLine("There was an error accessing the web utilities.");
return;
}
Stream sum_dataStream = sum_response.GetResponseStream();
StreamReader sum_reader = new StreamReader(sum_dataStream);
string sum_responseFromServer = sum_reader.ReadToEnd();
sum_reader.Close();
sum_response.Close();
view_list.SetFound(new XmlTextReader(new StringReader(sum_responseFromServer)));
view_list.On();
}