Exemple #1
0
        private void Abstract_Load(object sender, EventArgs e)
        {
            this.Text = name;
            if (id == null)
            {
                abstractBox.Text = "There were no abstracts found";
                return;
            }
            string datapage = EutilsURLBuilder.getFile("pubmed", id, "text", "abstract");

            System.Net.WebRequest request = WebRequest.Create(datapage);
            WebResponse           response;

            try
            {
                response = request.GetResponse();
            }
            catch
            {
                abstractBox.Text = "There were errors accessing the abstract page.";
                return;
            }
            Stream       dataStream = response.GetResponseStream();
            StreamReader reader     = new StreamReader(dataStream);
            string       abr        = reader.ReadToEnd();

            abstractBox.Text = abr.Replace("\n", "\r\n");
            reader.Close();
            response.Close();
        }
Exemple #2
0
        private void Get_Page(string id)
        {
            // get page from ID
            string datapage = EutilsURLBuilder.getFile("nucleotide", id, "gb", "xml");

            Console.WriteLine(datapage);
            WebRequest  request = WebRequest.Create(datapage);
            WebResponse response;

            try
            {
                response = request.GetResponse();
            }
            catch
            {
                Console.WriteLine("There was an error accessing the web utilities.");
                return;
            }
            Stream       dataStream         = response.GetResponseStream();
            StreamReader reader             = new StreamReader(dataStream);
            string       responseFromServer = reader.ReadToEnd();

            Console.WriteLine(responseFromServer);
            reader.Close();
            response.Close();

            // get name & location & put in vector

            prevSEQ = curSEQ;
            curSEQ  = new Sequence(new XmlTextReader(new StringReader(responseFromServer)));

            listitems.Clear();
            foreach (Sequence.feature feat in curSEQ.featurelist)
            {
                listitems.Add(feat.name);
            }
            featureListBox.DataSource = listitems;

            SetTitles();
            graphstart = 1;
            viewer.On();
            isSeqView = true;

            Refresh();
        }
Exemple #3
0
        private void get_page_Click(object sender, EventArgs e)
        {
            viewer.Off();
            isSeqView = false;
            Control[]   boxArray    = { Accession, Organism, Feature_key, dropDown, All_fields };
            WebRequest  id_request  = WebRequest.Create(EutilsURLBuilder.makeQueryURL(boxArray, "nucleotide", 30));
            WebResponse id_response = null;

            try {
                id_response = id_request.GetResponse();
            }
            catch {
                Console.WriteLine("There was an error accessing the web utilities.");
                return;
            }
            Stream       id_dataStream         = id_response.GetResponseStream();
            StreamReader id_reader             = new StreamReader(id_dataStream);
            string       id_responseFromServer = id_reader.ReadToEnd();

            id_reader.Close();
            id_response.Close();

            Match id_matches = Regex.Match(id_responseFromServer, "<Id>(\\d+)</Id>");

            XmlTextReader id_read = new XmlTextReader(new StringReader(id_responseFromServer));

            string        thisName = "";
            List <string> ids      = new List <string>();

            while (id_read.Read())
            {
                if (id_read.NodeType == XmlNodeType.Element)
                {
                    thisName = id_read.Name;
                }
                else if (id_read.NodeType == XmlNodeType.Text && thisName == "Id")
                {
                    ids.Add(id_read.Value);
                }
                else if (id_read.NodeType == XmlNodeType.Text && thisName == "ERROR")
                {
                    Console.WriteLine("There was an error accessing the web utilities.");
                }
            }


            WebRequest  sum_request  = WebRequest.Create(EutilsURLBuilder.getSummary("nucleotide", ids));
            WebResponse sum_response = null;

            try
            {
                sum_response = sum_request.GetResponse();
            }
            catch
            {
                Console.WriteLine("There was an error accessing the web utilities.");
                return;
            }
            Stream       sum_dataStream         = sum_response.GetResponseStream();
            StreamReader sum_reader             = new StreamReader(sum_dataStream);
            string       sum_responseFromServer = sum_reader.ReadToEnd();

            sum_reader.Close();
            sum_response.Close();

            view_list.SetFound(new XmlTextReader(new StringReader(sum_responseFromServer)));
            view_list.On();
        }