public void TestParseFromVersion_27_12_WithoutDuplicatedReferencesCheck() { var parser = new OutParser(false); IIdentifiedSpectrum peptide = parser.ParseFromFile(@TestContext.CurrentContext.TestDirectory + "/../../../data//mouseliver.4587.4587.2.out"); Assert.IsNotNull(peptide); Assert.AreEqual("20030714_MouseLiver_2,4587", peptide.Query.FileScan.ShortFileName); Assert.AreEqual("-.S*AILS*NTPS*LLALR.-", peptide.Peptides[0].Sequence); Assert.AreEqual("Q8VI59", peptide.Peptides[0].Proteins[0]); Assert.AreEqual(1696.6531, peptide.TheoreticalMH, 0.0001); Assert.AreEqual(1695.9512, peptide.ExperimentalMH, 0.0001); }
public SequestOutZipParser(bool raiseDuplicatedReferenceAbsentException, double modificationDeltaScore) { this.parser = new ModificationOutParser(raiseDuplicatedReferenceAbsentException, modificationDeltaScore); }
public SequestOutZipParser(bool raiseDuplicatedReferenceAbsentException) { this.parser = new OutParser(raiseDuplicatedReferenceAbsentException); }
public void TestParseFromVersion_27_12_WithDuplicatedReferencesCheck() { var parser = new OutParser(true); parser.ParseFromFile(@TestContext.CurrentContext.TestDirectory + "/../../../data//mouseliver.4587.4587.2.out"); }