public IndividualGenomeDatabase Read()
{
// Initialize the database.
var database = new IndividualGenomeDatabase();
// Read the table of SNP genotypes.
tableReader.Read(
delegate(string[] columns)
{
if (columns.Length == 4)
{
// Parse a column of this format: rs# chromosome position genotype
var snpId = columns[0];
var snpValue = new SNPGenotype();
snpValue.genotype = DNA.StringToDiploidGenotype(columns[3]);
snpValue.orientation = Orientation.Plus;
// Add the SNP genotype to the database.
database.AddSNPValue(snpId, snpValue);
}
});
return(database);
}
public IndividualGenomeDatabase Read()
{
// Initialize the database.
var database = new IndividualGenomeDatabase();
// Read the table of SNP genotypes.
tableReader.Read(
delegate(string[] columns)
{
if (columns.Length == 6)
{
// Parse a column of this format: rs4477212,A/G,1,72017,+,AA
var snpId = columns[0];
var snpValue = new SNPGenotype();
snpValue.genotype = DNA.StringToDiploidGenotype(columns[5]);
snpValue.orientation = DNA.StringToOrientation(columns[4]);
// Add the SNP genotype to the database.
database.AddSNPValue(snpId, snpValue);
}
});
return(database);
}