internal virtual void addAtomWithMappedName(Atom atom) { addAtom(atom); mapMostRecentAtomName(); }
internal virtual void addAtom(Atom atom) { if (atomCount == atoms.Length) atoms = (Atom[])AtomSetCollectionReader.doubleLength(atoms); atoms[atomCount++] = atom; if (atomSetCount == 0) { atomSetCount = 1; currentAtomSetIndex = 0; atomSetNumbers[0] = 1; } atom.atomSetIndex = currentAtomSetIndex; ++atomSetAtomCounts[currentAtomSetIndex]; /* System.out.println("addAtom ... after" + "\natomCount=" + atomCount + "\natomSetCount=" + atomSetCount + "\natomSetAtomCounts[" + (currentAtomSetIndex) + "]=" + atomSetAtomCounts[atomSetIndex]); */ }
internal virtual Atom newCloneAtom(Atom atom) { // System.out.println("newCloneAtom()"); Atom clone = atom.cloneAtom(); addAtom(clone); return clone; }
internal virtual Atom addNewAtom() { Atom atom = new Atom(); addAtom(atom); return atom; }
public override bool hasNext() { if (iatom == atomSetCollection.atomCount) return false; atom = atomSetCollection.atoms[iatom++]; return true; }