internal virtual void addAtomWithMappedName(Atom atom)
{
addAtom(atom);
mapMostRecentAtomName();
}
internal virtual void addAtom(Atom atom)
{
if (atomCount == atoms.Length)
atoms = (Atom[])AtomSetCollectionReader.doubleLength(atoms);
atoms[atomCount++] = atom;
if (atomSetCount == 0)
{
atomSetCount = 1;
currentAtomSetIndex = 0;
atomSetNumbers[0] = 1;
}
atom.atomSetIndex = currentAtomSetIndex;
++atomSetAtomCounts[currentAtomSetIndex];
/*
System.out.println("addAtom ... after" +
"\natomCount=" + atomCount +
"\natomSetCount=" + atomSetCount +
"\natomSetAtomCounts[" + (currentAtomSetIndex) + "]=" +
atomSetAtomCounts[atomSetIndex]);
*/
}
internal virtual Atom newCloneAtom(Atom atom)
{
// System.out.println("newCloneAtom()");
Atom clone = atom.cloneAtom();
addAtom(clone);
return clone;
}
internal virtual Atom addNewAtom()
{
Atom atom = new Atom();
addAtom(atom);
return atom;
}
public override bool hasNext()
{
if (iatom == atomSetCollection.atomCount)
return false;
atom = atomSetCollection.atoms[iatom++];
return true;
}