//---------------------------------------------------------------------
/// <summary>
/// Computes the initial biomass at a site.
/// </summary>
/// <param name="site">
/// The selected site.
/// </param>
/// <param name="initialCommunity">
/// The initial community of age cohorts at the site.
/// </param>
public static InitialBiomass Compute(ActiveSite site,
ICommunity initialCommunity)
{
IEcoregion ecoregion = PlugIn.ModelCore.Ecoregion[site];
uint key = ComputeKey(initialCommunity.MapCode, ecoregion.MapCode);
InitialBiomass initialBiomass;
if (initialSites.TryGetValue(key, out initialBiomass))
{
return(initialBiomass);
}
// If we don't have a sorted list of age cohorts for the initial
// community, make the list
List <Landis.Library.AgeOnlyCohorts.ICohort> sortedAgeCohorts;
if (!sortedCohorts.TryGetValue(initialCommunity.MapCode, out sortedAgeCohorts))
{
sortedAgeCohorts = SortCohorts(initialCommunity.Cohorts);
sortedCohorts[initialCommunity.MapCode] = sortedAgeCohorts;
}
SiteCohorts cohorts = MakeBiomassCohorts(sortedAgeCohorts, site);
initialBiomass = new InitialBiomass(cohorts,
SiteVars.WoodyDebris[site],
SiteVars.Litter[site]);
initialSites[key] = initialBiomass;
return(initialBiomass);
}
//---------------------------------------------------------------------
protected override void InitializeSite(ActiveSite site)//,ICommunity initialCommunity)
{
InitialBiomass initialBiomass = InitialBiomass.Compute(site, initialCommunity);
SiteVars.Cohorts[site] = InitialBiomass.Clone(initialBiomass.Cohorts);
SiteVars.WoodyDebris[site] = initialBiomass.DeadWoodyPool.Clone();
SiteVars.Litter[site] = initialBiomass.DeadNonWoodyPool.Clone();
}
//---------------------------------------------------------------------
public override void Initialize()
{
Timestep = Parameters.Timestep;
time = Timestep;
CalibrateMode = Parameters.CalibrateMode;
CohortBiomass.SpinupMortalityFraction = Parameters.SpinupMortalityFraction;
//Initialize climate.
if (Parameters.ClimateConfigFile != null)
{
Climate.Initialize(Parameters.ClimateConfigFile, false, modelCore);
FutureClimateBaseYear = Climate.Future_MonthlyData.Keys.Min();
ClimateRegionData.Initialize(Parameters);
}
sufficientLight = Parameters.LightClassProbabilities;
SpeciesData.Initialize(Parameters);
EcoregionData.Initialize(Parameters);
DynamicInputs.Initialize(Parameters.DynamicInputFile, false);
SpeciesData.ChangeDynamicParameters(0); // Year 0
FireEffects.Initialize(Parameters);
//Outputs.Initialize(parameters);
MetadataHandler.InitializeMetadata(summaryLogFileName);
// Cohorts must be created before the base class is initialized
// because the base class' reproduction module uses the core's
// SuccessionCohorts property in its Initialization method.
Landis.Library.BiomassCohorts.Cohorts.Initialize(Timestep, new CohortBiomass());
// Initialize Reproduction routines:
Reproduction.SufficientResources = SufficientLight;
Reproduction.Establish = Establish;
Reproduction.AddNewCohort = AddNewCohort;
Reproduction.MaturePresent = MaturePresent;
Reproduction.PlantingEstablish = PlantingEstablish;
base.Initialize(modelCore, Parameters.SeedAlgorithm);
InitialBiomass.Initialize(Timestep);
Landis.Library.BiomassCohorts.Cohort.DeathEvent += CohortTotalMortality;
Landis.Library.BiomassCohorts.Cohort.PartialDeathEvent += CohortPartialMortality;
InitializeSites(Parameters.InitialCommunities, Parameters.InitialCommunitiesMap, modelCore);
}
//---------------------------------------------------------------------
/// <summary>
/// Computes the initial biomass at a site.
/// </summary>
/// <param name="site">
/// The selected site.
/// </param>
/// <param name="initialCommunity">
/// The initial community of age cohorts at the site.
/// </param>
public static InitialBiomass Compute(ActiveSite site,
ICommunity initialCommunity)
{
IEcoregion ecoregion = PlugIn.ModelCore.Ecoregion[site];
uint key = ComputeKey(initialCommunity.MapCode, ecoregion.MapCode);
InitialBiomass initialBiomass;
if (initialSites.TryGetValue(key, out initialBiomass))
return initialBiomass;
// If we don't have a sorted list of age cohorts for the initial
// community, make the list
List<Landis.Library.AgeOnlyCohorts.ICohort> sortedAgeCohorts;
if (!sortedCohorts.TryGetValue(initialCommunity.MapCode, out sortedAgeCohorts))
{
sortedAgeCohorts = SortCohorts(initialCommunity.Cohorts);
sortedCohorts[initialCommunity.MapCode] = sortedAgeCohorts;
}
SiteCohorts cohorts = MakeBiomassCohorts(sortedAgeCohorts, site);
initialBiomass = new InitialBiomass(cohorts,
SiteVars.WoodyDebris[site],
SiteVars.Litter[site]);
initialSites[key] = initialBiomass;
return initialBiomass;
}
