/// <summary> /// Private constructor for clone method. /// </summary> /// <param name="other">Other Operon instance.</param> private OperonRegion(OperonRegion other) : base(other) { }
/// <summary> /// Validate GenBank Operon features /// </summary> /// <param name="nodeName">XML node name</param> /// <param name="genMetadata">GenBank Metadata</param> private void ValidateGenBankOperon(string nodeName, GenBankMetadata genMetadata) { // Get Values from XML node. string expectedLocation = utilityObj.xmlUtil.GetTextValue( nodeName, Constants.Location); string expectedAllele = utilityObj.xmlUtil.GetTextValue( nodeName, Constants.AlleleNode); string featureCount = utilityObj.xmlUtil.GetTextValue( nodeName, Constants.QualifierCount); string expectedDbReference = utilityObj.xmlUtil.GetTextValue( nodeName, Constants.DbReferenceNode); string expectedCitation = utilityObj.xmlUtil.GetTextValue( nodeName, Constants.CitationNode); string expectedExperiment = utilityObj.xmlUtil.GetTextValue( nodeName, Constants.ExperimentNode); string expectedInference = utilityObj.xmlUtil.GetTextValue( nodeName, Constants.InferenceNode); string expectedLabel = utilityObj.xmlUtil.GetTextValue( nodeName, Constants.LabelNode); string expectedNote = utilityObj.xmlUtil.GetTextValue( nodeName, Constants.Note); string expectedMap = utilityObj.xmlUtil.GetTextValue( nodeName, Constants.GenbankMapNode); List<OperonRegion> operonFeatureList = genMetadata.Features.OperonRegions; var locBuilder = new LocationBuilder(); // Create a copy of Long Terminal Repeat feature. OperonRegion cloneOperon = operonFeatureList[0].Clone(); // Validate Operon region qualifiers. Assert.AreEqual(operonFeatureList.Count.ToString((IFormatProvider) null), featureCount); Assert.AreEqual(cloneOperon.DatabaseCrossReference[0], expectedDbReference); Assert.AreEqual(operonFeatureList[0].Allele, expectedAllele); Assert.AreEqual(operonFeatureList[0].Citation[0], expectedCitation); Assert.AreEqual(operonFeatureList[0].Experiment[0], expectedExperiment); Assert.AreEqual(operonFeatureList[0].GenomicMapPosition, expectedMap); Assert.AreEqual(operonFeatureList[0].Inference[0], expectedInference); Assert.AreEqual(operonFeatureList[0].Label, expectedLabel); Assert.AreEqual(locBuilder.GetLocationString( genMetadata.Features.OperonRegions[0].Location), expectedLocation); Assert.AreEqual(operonFeatureList[0].Note[0], expectedNote); Assert.IsFalse(string.IsNullOrEmpty(operonFeatureList[0].Function.ToString())); Assert.AreEqual(operonFeatureList[0].GenomicMapPosition, expectedMap); Assert.IsTrue(string.IsNullOrEmpty(operonFeatureList[0].Operon)); Assert.IsFalse(string.IsNullOrEmpty(operonFeatureList[0].Phenotype.ToString())); Assert.IsTrue(string.IsNullOrEmpty(operonFeatureList[0].StandardName)); Assert.IsFalse(operonFeatureList[0].Pseudo); // Create a new Operon feature using constructor. var operonRegion = new OperonRegion(expectedLocation); var operonRegionWithLoc = new OperonRegion( genMetadata.Features.OperonRegions[0].Location); // Set and validate qualifiers. operonRegion.Allele = expectedAllele; operonRegionWithLoc.GenomicMapPosition = expectedMap; Assert.AreEqual(operonRegionWithLoc.GenomicMapPosition, expectedMap); Assert.AreEqual(operonRegion.Allele, expectedAllele); }