/// <summary>
/// Private constructor for clone method.
/// </summary>
/// <param name="other">Other Operon instance.</param>
private OperonRegion(OperonRegion other)
: base(other)
{
}
/// <summary>
/// Private constructor for clone method.
/// </summary>
/// <param name="other">Other Operon instance.</param>
private OperonRegion(OperonRegion other)
: base(other) { }
/// <summary>
/// Validate GenBank Operon features
/// </summary>
/// <param name="nodeName">XML node name</param>
/// <param name="genMetadata">GenBank Metadata</param>
private void ValidateGenBankOperon(string nodeName,
GenBankMetadata genMetadata)
{
// Get Values from XML node.
string expectedLocation = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.Location);
string expectedAllele = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.AlleleNode);
string featureCount = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.QualifierCount);
string expectedDbReference = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.DbReferenceNode);
string expectedCitation = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.CitationNode);
string expectedExperiment = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.ExperimentNode);
string expectedInference = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.InferenceNode);
string expectedLabel = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.LabelNode);
string expectedNote = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.Note);
string expectedMap = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.GenbankMapNode);
List<OperonRegion> operonFeatureList =
genMetadata.Features.OperonRegions;
var locBuilder = new LocationBuilder();
// Create a copy of Long Terminal Repeat feature.
OperonRegion cloneOperon = operonFeatureList[0].Clone();
// Validate Operon region qualifiers.
Assert.AreEqual(operonFeatureList.Count.ToString((IFormatProvider) null),
featureCount);
Assert.AreEqual(cloneOperon.DatabaseCrossReference[0],
expectedDbReference);
Assert.AreEqual(operonFeatureList[0].Allele,
expectedAllele);
Assert.AreEqual(operonFeatureList[0].Citation[0],
expectedCitation);
Assert.AreEqual(operonFeatureList[0].Experiment[0],
expectedExperiment);
Assert.AreEqual(operonFeatureList[0].GenomicMapPosition,
expectedMap);
Assert.AreEqual(operonFeatureList[0].Inference[0],
expectedInference);
Assert.AreEqual(operonFeatureList[0].Label,
expectedLabel);
Assert.AreEqual(locBuilder.GetLocationString(
genMetadata.Features.OperonRegions[0].Location),
expectedLocation);
Assert.AreEqual(operonFeatureList[0].Note[0],
expectedNote);
Assert.IsFalse(string.IsNullOrEmpty(operonFeatureList[0].Function.ToString()));
Assert.AreEqual(operonFeatureList[0].GenomicMapPosition,
expectedMap);
Assert.IsTrue(string.IsNullOrEmpty(operonFeatureList[0].Operon));
Assert.IsFalse(string.IsNullOrEmpty(operonFeatureList[0].Phenotype.ToString()));
Assert.IsTrue(string.IsNullOrEmpty(operonFeatureList[0].StandardName));
Assert.IsFalse(operonFeatureList[0].Pseudo);
// Create a new Operon feature using constructor.
var operonRegion =
new OperonRegion(expectedLocation);
var operonRegionWithLoc = new OperonRegion(
genMetadata.Features.OperonRegions[0].Location);
// Set and validate qualifiers.
operonRegion.Allele = expectedAllele;
operonRegionWithLoc.GenomicMapPosition = expectedMap;
Assert.AreEqual(operonRegionWithLoc.GenomicMapPosition,
expectedMap);
Assert.AreEqual(operonRegion.Allele, expectedAllele);
}
