public EGFRToALKReflexAnalysisResult(YellowstonePathology.Business.Test.AccessionOrder accessionOrder,
YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder egfrToALKReflexAnalysisTestOrder)
{
this.m_EGFRToALKReflexAnalysisEGFRResult = new EGFRToALKReflexAnalysisEGFRResult(accessionOrder);
this.m_EGFRToALKReflexAnalysisALKResult = new EGFRToALKReflexAnalysisALKResult(accessionOrder, this.m_EGFRToALKReflexAnalysisEGFRResult.EGFRMutationAnalysisResult, egfrToALKReflexAnalysisTestOrder);
this.m_EGFRToALKReflexAnalysisROS1RResult = new EGFRToALKReflexAnalysisROS1Result(accessionOrder, this.m_EGFRToALKReflexAnalysisEGFRResult.EGFRMutationAnalysisResult, egfrToALKReflexAnalysisTestOrder);
this.m_EGFRToALKReflexAnalysisPDL1RResult = new EGFRToALKReflexAnalysisPDL1Result(accessionOrder, this.m_EGFRToALKReflexAnalysisEGFRResult.EGFRMutationAnalysisResult, egfrToALKReflexAnalysisTestOrder);
}
public EGFRToALKReflexPath(string reportNo, YellowstonePathology.Business.Test.AccessionOrder accessionOrder,
YellowstonePathology.UI.Navigation.PageNavigator pageNavigator,
System.Windows.Window window,
System.Windows.Visibility backButtonVisibility) : base(pageNavigator, window)
{
this.m_AccessionOrder = accessionOrder;
this.m_BackButtonVisibility = backButtonVisibility;
this.m_EGFRToALKReflexAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(reportNo);
}
public EGFRToALKReflexPath(string reportNo, YellowstonePathology.Business.Test.AccessionOrder accessionOrder,
YellowstonePathology.UI.Navigation.PageNavigator pageNavigator,
System.Windows.Window window,
System.Windows.Visibility backButtonVisibility)
: base(pageNavigator, window)
{
this.m_AccessionOrder = accessionOrder;
this.m_BackButtonVisibility = backButtonVisibility;
this.m_EGFRToALKReflexAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder)this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(reportNo);
}
public EGFRToALKReflexPage(YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder testOrder,
YellowstonePathology.Business.Test.AccessionOrder accessionOrder,
YellowstonePathology.Business.User.SystemIdentity systemIdentity,
System.Windows.Visibility backButtonVisibility)
: base(testOrder, accessionOrder)
{
this.m_AccessionOrder = accessionOrder;
this.m_SystemIdentity = systemIdentity;
this.m_BackButtonVisibility = backButtonVisibility;
this.m_EGFRToALKReflexAnalysisTestOrder = testOrder;
this.m_EGFRToALKReflexAnalysisTestOrder.SetStatus(this.m_AccessionOrder.PanelSetOrderCollection);
this.m_EGFRMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder)this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(60);
if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(131) == true)
{
this.m_ALKForNSCLCByFISHTestOrder = (YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder)this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(131);
}
else if(this.m_AccessionOrder.PanelSetOrderCollection.Exists(68) == true)
{
this.m_ALKForNSCLCByFISHTestOrder = new YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder();
}
this.m_PageHeaderText = this.m_EGFRToALKReflexAnalysisTestOrder.PanelSetName + " for: " + this.m_AccessionOrder.PatientDisplayName;
YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrderByOrderTarget(this.m_EGFRToALKReflexAnalysisTestOrder.OrderedOnId);
YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetAliquotOrder(this.m_EGFRToALKReflexAnalysisTestOrder.OrderedOnId);
this.m_OrderedOnDescription = specimenOrder.Description;
if (aliquotOrder != null) this.m_OrderedOnDescription += ": " + aliquotOrder.Label;
this.m_EGFRToALKReflexAnalysisResult = new Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisResult(this.m_AccessionOrder, this.m_EGFRToALKReflexAnalysisTestOrder);
InitializeComponent();
this.DataContext = this;
this.m_ControlsNotDisabledOnFinal.Add(this.ButtonBack);
this.m_ControlsNotDisabledOnFinal.Add(this.ButtonFinish);
this.m_ControlsNotDisabledOnFinal.Add(this.TextBlockShowDocument);
this.m_ControlsNotDisabledOnFinal.Add(this.TextBlockUnfinalResults);
}
public EGFRToALKReflexPage(YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder testOrder,
YellowstonePathology.Business.Test.AccessionOrder accessionOrder,
YellowstonePathology.Business.User.SystemIdentity systemIdentity,
System.Windows.Visibility backButtonVisibility) : base(testOrder, accessionOrder)
{
this.m_AccessionOrder = accessionOrder;
this.m_SystemIdentity = systemIdentity;
this.m_BackButtonVisibility = backButtonVisibility;
this.m_EGFRToALKReflexAnalysisTestOrder = testOrder;
this.m_EGFRToALKReflexAnalysisTestOrder.SetStatus(this.m_AccessionOrder.PanelSetOrderCollection);
this.m_EGFRMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(60);
if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(131) == true)
{
this.m_ALKForNSCLCByFISHTestOrder = (YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(131);
}
else if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(68) == true)
{
this.m_ALKForNSCLCByFISHTestOrder = new YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder();
}
this.m_PageHeaderText = this.m_EGFRToALKReflexAnalysisTestOrder.PanelSetName + " for: " + this.m_AccessionOrder.PatientDisplayName;
YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrderByOrderTarget(this.m_EGFRToALKReflexAnalysisTestOrder.OrderedOnId);
YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetAliquotOrder(this.m_EGFRToALKReflexAnalysisTestOrder.OrderedOnId);
this.m_OrderedOnDescription = specimenOrder.Description;
if (aliquotOrder != null)
{
this.m_OrderedOnDescription += ": " + aliquotOrder.Label;
}
InitializeComponent();
this.DataContext = this;
this.m_ControlsNotDisabledOnFinal.Add(this.ButtonBack);
this.m_ControlsNotDisabledOnFinal.Add(this.ButtonFinish);
this.m_ControlsNotDisabledOnFinal.Add(this.TextBlockShowDocument);
this.m_ControlsNotDisabledOnFinal.Add(this.TextBlockUnfinalResults);
}
public EGFRToALKReflexAnalysisALKResult(YellowstonePathology.Business.Test.AccessionOrder accessionOrder,
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisResult egfrMutationAnalysisResult,
YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder egfrToALKReflexAnalysisTestOrder)
: base(accessionOrder, 131)
{
if (egfrToALKReflexAnalysisTestOrder.QNSForALK == true)
{
this.m_Status = EGFRToALKReflexAnalysisElementStatusEnum.QNS;
}
else
{
if (egfrMutationAnalysisResult != null)
{
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisDetectedResult egfrMutationAnalysisDetectedResult = new EGFRMutationAnalysis.EGFRMutationAnalysisDetectedResult();
if (egfrMutationAnalysisResult.ResultCode == egfrMutationAnalysisDetectedResult.ResultCode)
{
this.m_Status = EGFRToALKReflexAnalysisElementStatusEnum.NotIndicated;
}
else
{
if (this.m_Ordered == false)
{
this.m_Status = EGFRToALKReflexAnalysisElementStatusEnum.OrderRequired;
}
else if (this.m_Final == true)
{
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHResultCollection alkForNSCLCByFISHResultCollection = new ALKForNSCLCByFISH.ALKForNSCLCByFISHResultCollection();
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder alkForNSCLCByFISHTestOrder = (YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder) this.m_PanelSetOrder;
this.m_ResultAbbreviation = alkForNSCLCByFISHResultCollection.GetByResultCode(alkForNSCLCByFISHTestOrder.ResultCode).ResultAbbreviation;
}
}
}
else
{
this.m_Status = EGFRToALKReflexAnalysisElementStatusEnum.Pending;
}
}
}
private bool ShowReflexTestPage()
{
bool result = false;
YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTest panelSet = new Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTest();
if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(panelSet.PanelSetId, this.m_TestOrder.OrderedOnId, true) == true)
{
YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder testOrder = (YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(panelSet.PanelSetId, this.m_TestOrder.OrderedOnId, true);
result = true;
Test.EGFRToALKReflexPath eGFRToALKReflexPath = new Test.EGFRToALKReflexPath(testOrder.ReportNo, this.m_AccessionOrder, this.m_PageNavigator, this.m_Window, System.Windows.Visibility.Visible);
eGFRToALKReflexPath.Finish += new Test.EGFRToALKReflexPath.FinishEventHandler(EGFRToALKReflexPath_Finish);
eGFRToALKReflexPath.Back += EGFRToALKReflexPath_Back;
eGFRToALKReflexPath.Start();
}
return(result);
}
public override void ToXml(XElement document)
{
YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder egfrToALKReflexAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_ReportNo);
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(60);
if (egfrMutationAnalysisTestOrder != null)
{
this.AddHeader(document, egfrToALKReflexAnalysisTestOrder, egfrToALKReflexAnalysisTestOrder.PanelSetName);
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("EGFR Mutation Analysis: " + egfrMutationAnalysisTestOrder.Result, document, "F");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("Comment: ", document, "F");
this.HandleLongString(egfrMutationAnalysisTestOrder.Comment, document, "F");
this.AddNextObxElement("", document, "F");
}
if (String.IsNullOrEmpty(egfrToALKReflexAnalysisTestOrder.ALKForNSCLCByFISHResult) == false)
{
this.AddNextObxElement("ALK Rearrangement Analysis: " + egfrToALKReflexAnalysisTestOrder.ALKForNSCLCByFISHResult, document, "F");
this.AddNextObxElement("", document, "F");
}
if (String.IsNullOrEmpty(egfrToALKReflexAnalysisTestOrder.ROS1ByFISHResult) == false)
{
this.AddNextObxElement("ROS1 Rearrangement Analysis: " + egfrToALKReflexAnalysisTestOrder.ROS1ByFISHResult, document, "F");
this.AddNextObxElement("", document, "F");
}
if (string.IsNullOrEmpty(egfrToALKReflexAnalysisTestOrder.PDL1SP142StainPercent) == false)
{
this.AddNextObxElement("PD-L1 (SP142): " + egfrToALKReflexAnalysisTestOrder.PDL1SP142StainPercent, document, "F");
this.AddNextObxElement("", document, "F");
}
if (String.IsNullOrEmpty(egfrToALKReflexAnalysisTestOrder.PDL122C3Result) == false)
{
this.AddNextObxElement("PD-L1 (22C3): " + egfrToALKReflexAnalysisTestOrder.PDL122C3Result, document, "F");
this.AddNextObxElement("", document, "F");
}
if (String.IsNullOrEmpty(egfrToALKReflexAnalysisTestOrder.BRAFMutationAnalysisResult) == false)
{
this.AddNextObxElement("BRAF Mutation Analysis: " + egfrToALKReflexAnalysisTestOrder.BRAFMutationAnalysisResult, document, "F");
this.AddNextObxElement("", document, "F");
}
if (string.IsNullOrEmpty(egfrToALKReflexAnalysisTestOrder.Comment) == false)
{
this.AddNextObxElement("QNS: " + EGFRToALKReflexAnalysisTestOrder.QNSStatement, document, "F");
this.AddNextObxElement("", document, "F");
}
this.AddNextObxElement("Pathologist: " + egfrToALKReflexAnalysisTestOrder.Signature, document, "F");
if (egfrToALKReflexAnalysisTestOrder.FinalTime.HasValue == true)
{
this.AddNextObxElement("E-signed " + egfrToALKReflexAnalysisTestOrder.FinalTime.Value.ToString("MM/dd/yyyy HH:mm"), document, "F");
}
this.AddNextObxElement("", document, "F");
this.AddAmendments(document);
this.AddNextObxElement("Interpretation: ", document, "F");
this.HandleLongString(egfrToALKReflexAnalysisTestOrder.Interpretation, document, "F");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("Method: ", document, "F");
this.HandleLongString(egfrToALKReflexAnalysisTestOrder.Method, document, "F");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("References: ", document, "F");
this.HandleLongString(egfrToALKReflexAnalysisTestOrder.ReportReferences, document, "F");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement(egfrToALKReflexAnalysisTestOrder.GetLocationPerformedComment(), document, "F");
this.AddNextObxElement(string.Empty, document, "F");
}
public override void Render()
{
this.m_TemplateName = @"\\CFileServer\Documents\ReportTemplates\XmlTemplates\EGFRToALKReflexAnalysis.4.xml";
this.OpenTemplate();
this.SetDemographicsV2();
this.SetReportDistribution();
YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder egfrToALKReflexAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(124);
base.ReplaceText("report_title", egfrToALKReflexAnalysisTestOrder.PanelSetName);
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(60);
base.ReplaceText("egfr_result", egfrMutationAnalysisTestOrder.Result);
base.SetXMLNodeParagraphData("egfr_comment", egfrMutationAnalysisTestOrder.Comment);
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisDetectedResult egfrMutationAnalysisDetectedResult = new EGFRMutationAnalysis.EGFRMutationAnalysisDetectedResult();
if (egfrMutationAnalysisTestOrder.ResultCode == egfrMutationAnalysisDetectedResult.ResultCode)
{
base.ReplaceText("alk_result", "Not Indicated");
base.ReplaceText("ros1_result", "Not Indicated");
base.ReplaceText("pdl1_result", "Not Indicated");
}
if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(131) == true)
{
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder alkForNSCLCByFISHTestOrder = (YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(131);
base.ReplaceText("alk_result", alkForNSCLCByFISHTestOrder.Result);
}
else if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(68) == true)
{
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrderReportedSeparately alkForNSCLCByFISHTestOrderReportedSeparately = new YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrderReportedSeparately();
base.ReplaceText("alk_result", alkForNSCLCByFISHTestOrderReportedSeparately.Result);
}
else if (egfrToALKReflexAnalysisTestOrder.QNSForALK == true)
{
base.ReplaceText("alk_result", "Quantity not sufficient to perform ALK");
}
else
{
base.ReplaceText("alk_result", "ALK not performed");
}
if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(204) == true)
{
YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTestOrder ros1ByFISHTestOrder = (YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(204);
base.ReplaceText("ros1_result", ros1ByFISHTestOrder.Result);
}
if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(215) == true)
{
YellowstonePathology.Business.Test.PDL1.PDL1TestOrder pdl1TestOrder = (YellowstonePathology.Business.Test.PDL1.PDL1TestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(215);
base.ReplaceText("pdl1_result", pdl1TestOrder.Result);
}
if (egfrToALKReflexAnalysisTestOrder.QNSForPDL1 == true)
{
base.ReplaceText("pdl1_result", "Quantity not sufficient to perform PDL-1");
}
base.SetXMLNodeParagraphData("report_interpretation", egfrToALKReflexAnalysisTestOrder.Interpretation);
this.ReplaceText("report_date", BaseData.GetShortDateString(egfrToALKReflexAnalysisTestOrder.FinalDate));
this.ReplaceText("pathologist_signature", egfrToALKReflexAnalysisTestOrder.Signature);
this.SetXMLNodeParagraphData("report_method", egfrToALKReflexAnalysisTestOrder.Method);
this.SetXMLNodeParagraphData("report_references", egfrToALKReflexAnalysisTestOrder.References);
YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetAliquotOrder(egfrToALKReflexAnalysisTestOrder.OrderedOnId);
YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrder(egfrToALKReflexAnalysisTestOrder.OrderedOn, egfrMutationAnalysisTestOrder.OrderedOnId);
string specimenDescription = specimenOrder.Description + ", Block " + aliquotOrder.Label;
this.ReplaceText("specimen_description", specimenDescription);
string collectionDateTimeString = YellowstonePathology.Business.Helper.DateTimeExtensions.CombineDateAndTime(specimenOrder.CollectionDate, specimenOrder.CollectionTime);
this.SetXmlNodeData("date_time_collected", collectionDateTimeString);
this.ReplaceText("tumor_nuclei_percentage", egfrToALKReflexAnalysisTestOrder.TumorNucleiPercentage);
this.SaveReport();
}
public override void Render()
{
this.m_TemplateName = @"\\CFileServer\Documents\ReportTemplates\XmlTemplates\EGFRALKROS1PDLBRAF.2.xml";
this.OpenTemplate();
this.SetDemographicsV2();
this.SetReportDistribution();
YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder egfrToALKReflexAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(124);
base.ReplaceText("report_title", egfrToALKReflexAnalysisTestOrder.PanelSetName);
if (string.IsNullOrEmpty(egfrToALKReflexAnalysisTestOrder.EGFRMutationAnalysisResult) == false)
{
base.ReplaceText("egfr_result", egfrToALKReflexAnalysisTestOrder.EGFRMutationAnalysisResult);
}
else
{
this.DeleteRow("egfr_result");
}
if (string.IsNullOrEmpty(egfrToALKReflexAnalysisTestOrder.EGFRMutationAnalysisComment) == false)
{
base.SetXMLNodeParagraphData("egfr_comment", egfrToALKReflexAnalysisTestOrder.EGFRMutationAnalysisComment);
}
else
{
this.DeleteRow("egfr_comment");
}
if (string.IsNullOrEmpty(egfrToALKReflexAnalysisTestOrder.ALKForNSCLCByFISHResult) == false)
{
base.ReplaceText("alk_result", egfrToALKReflexAnalysisTestOrder.ALKForNSCLCByFISHResult);
}
else
{
this.DeleteRow("alk_result");
}
if (string.IsNullOrEmpty(egfrToALKReflexAnalysisTestOrder.ROS1ByFISHResult) == false)
{
base.ReplaceText("ros1_result", egfrToALKReflexAnalysisTestOrder.ROS1ByFISHResult);
}
else
{
this.DeleteRow("ros1_result");
}
if (string.IsNullOrEmpty(egfrToALKReflexAnalysisTestOrder.PDL1SP142StainPercent) == false)
{
base.ReplaceText("pdl1sp142_result", egfrToALKReflexAnalysisTestOrder.PDL1SP142StainPercent);
}
else
{
this.DeleteRow("pdl1sp142_result");
}
if (string.IsNullOrEmpty(egfrToALKReflexAnalysisTestOrder.PDL122C3Result) == false)
{
base.ReplaceText("pdl122c3_result", egfrToALKReflexAnalysisTestOrder.PDL122C3Result);
}
else
{
this.DeleteRow("pdl122c3_result");
}
if (string.IsNullOrEmpty(egfrToALKReflexAnalysisTestOrder.BRAFMutationAnalysisResult) == false)
{
base.ReplaceText("braf_result", egfrToALKReflexAnalysisTestOrder.BRAFMutationAnalysisResult);
}
else
{
this.DeleteRow("braf_result");
}
if (string.IsNullOrEmpty(egfrToALKReflexAnalysisTestOrder.Comment) == false)
{
base.ReplaceText("qns_statement", egfrToALKReflexAnalysisTestOrder.Comment);
}
else
{
this.DeleteRow("qns_statement");
}
YellowstonePathology.Business.Amendment.Model.AmendmentCollection amendmentCollection = this.m_AccessionOrder.AmendmentCollection.GetAmendmentsForReport(egfrToALKReflexAnalysisTestOrder.ReportNo);
YellowstonePathology.Business.Document.AmendmentSection amendmentSection = new YellowstonePathology.Business.Document.AmendmentSection();
amendmentSection.SetAmendment(amendmentCollection, this.m_ReportXml, this.m_NameSpaceManager, true);
base.SetXMLNodeParagraphData("report_interpretation", egfrToALKReflexAnalysisTestOrder.Interpretation);
this.ReplaceText("report_date", BaseData.GetShortDateString(egfrToALKReflexAnalysisTestOrder.FinalDate));
this.ReplaceText("pathologist_signature", egfrToALKReflexAnalysisTestOrder.Signature);
this.SetXMLNodeParagraphData("report_method", egfrToALKReflexAnalysisTestOrder.Method);
this.SetXMLNodeParagraphData("report_references", egfrToALKReflexAnalysisTestOrder.ReportReferences);
YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetAliquotOrder(egfrToALKReflexAnalysisTestOrder.OrderedOnId);
YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrder(egfrToALKReflexAnalysisTestOrder.OrderedOn, egfrToALKReflexAnalysisTestOrder.OrderedOnId);
string specimenDescription = specimenOrder.Description + ", Block " + aliquotOrder.Label;
this.ReplaceText("specimen_description", specimenDescription);
string collectionDateTimeString = YellowstonePathology.Business.Helper.DateTimeExtensions.CombineDateAndTime(specimenOrder.CollectionDate, specimenOrder.CollectionTime);
this.SetXmlNodeData("date_time_collected", collectionDateTimeString);
this.ReplaceText("tumor_nuclei_percentage", egfrToALKReflexAnalysisTestOrder.TumorNucleiPercentage);
this.SaveReport();
}
public override void ToXml(XElement document)
{
YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder egfrToALKReflexAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_ReportNo);
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(60);
this.AddHeader(document, egfrToALKReflexAnalysisTestOrder, egfrToALKReflexAnalysisTestOrder.PanelSetName);
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("EGFR Mutation Analysis: " + egfrMutationAnalysisTestOrder.Result, document, "F");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("Comment: ", document, "F");
this.HandleLongString(egfrMutationAnalysisTestOrder.Comment, document, "F");
this.AddNextObxElement("", document, "F");
string alkResult = "ALK not performed";
if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(131) == true)
{
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder alkFoNSCLCByFISHTestOrder = (YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(131);
alkResult = alkFoNSCLCByFISHTestOrder.Result;
}
else if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(68) == true)
{
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder alkForNSCLCByFISHTestOrderReportedSeparately = new YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrderReportedSeparately();
alkResult = alkForNSCLCByFISHTestOrderReportedSeparately.Result;
}
this.AddNextObxElement("ALK Rearrangement Analysis: " + alkResult, document, "F");
this.AddNextObxElement("", document, "F");
string ros1Result = null;
if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(204) == true)
{
YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTestOrder ros1ByFISHTestOrder = (YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(204);
ros1Result = ros1ByFISHTestOrder.Result;
}
this.AddNextObxElement("ROS1 Rearrangement Analysis: " + ros1Result, document, "F");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("Pathologist: " + egfrToALKReflexAnalysisTestOrder.Signature, document, "F");
if (egfrToALKReflexAnalysisTestOrder.FinalTime.HasValue == true)
{
this.AddNextObxElement("E-signed " + egfrToALKReflexAnalysisTestOrder.FinalTime.Value.ToString("MM/dd/yyyy HH:mm"), document, "F");
}
this.AddNextObxElement("", document, "F");
this.AddAmendments(document);
this.AddNextObxElement("Interpretation: ", document, "F");
this.HandleLongString(egfrToALKReflexAnalysisTestOrder.Interpretation, document, "F");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("Method: ", document, "F");
this.HandleLongString(egfrToALKReflexAnalysisTestOrder.Method, document, "F");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("References: ", document, "F");
this.HandleLongString(egfrToALKReflexAnalysisTestOrder.References, document, "F");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement(egfrToALKReflexAnalysisTestOrder.GetLocationPerformedComment(), document, "F");
this.AddNextObxElement(string.Empty, document, "F");
}
