public void TestEmptySource()
{
wordsDataSource = new SimpleWordsDataSource();
WordProbability wp = wordsDataSource.GetWordProbability("myWord");
Assert.IsNull(wp);
}
public void MapToWordsTest(string sequence, int wordSize, int expectedCount)
{
IWordProbability wp = new WordProbability();
var map = wp.MapToWords(sequence, wordSize);
Assert.AreEqual(expectedCount, map.Count());
}
public void ReduceToWordsProbabilityTest()
{
IWordProbability wp = new WordProbability();
var map = wp.MapToWords("0010000200222", 2);
var result = wp.ReduceToWordsProbability(map);
Assert.AreEqual(5, result.Count);
}
public IEnumerable <string> GetSequenceAsSplitedWords(Person p, int wordLengh)
{
string sequence = p.GetNhanceSequenceString();
IWordProbability wp = new WordProbability();
var words = wp.MapToWords(sequence, wordLengh);
string traceStr = "Person " + p.Id + " has " + words.Count() + " words";
log.Debug(traceStr);
return(words);
}
public void TestSetAndGet()
{
WordProbability wp = null;
WordProbability wp2 = null;
wp = new WordProbability("myWord", 10, 30);
((SimpleWordsDataSource)wordsDataSource).SetWordProbability(wp);
wp2 = wordsDataSource.GetWordProbability("myWord");
Assert.IsNotNull(wp2);
Assert.AreEqual(wp, wp2);
}
public void TestAddMultipleNonMatches()
{
wordsDataSource = new SimpleWordsDataSource();
string word = "myWord";
int count = 10;
for (int i = 0; i < count; i++)
{
wordsDataSource.AddNonMatch(word);
}
WordProbability wp = wordsDataSource.GetWordProbability(word);
Assert.IsNotNull(wp);
Assert.AreEqual(count, wp.NonMatchingCount);
}
public void TestAddMatch()
{
wordsDataSource = new SimpleWordsDataSource();
wordsDataSource.AddMatch("myWord");
WordProbability wp = wordsDataSource.GetWordProbability("myWord");
Assert.IsNotNull(wp);
Assert.AreEqual(1, wp.MatchingCount);
Assert.AreEqual(0, wp.NonMatchingCount);
wordsDataSource.AddMatch("myWord");
Assert.AreEqual(2, wp.MatchingCount);
Assert.AreEqual(0, wp.NonMatchingCount);
}
public string GetDescriptionForTopic(int topic, bool include_topic_number = true, string separator = "; ", bool stop_at_word_probability_jump = true)
{
StringBuilder sb = new StringBuilder();
if (include_topic_number)
{
sb.Append(String.Format("{0}. ", topic + 1));
}
LDAAnalysis lda = LDAAnalysis;
WordProbability[] lda_wordprobs = lda.DensityOfWordsInTopicsSorted[topic];
ASSERT.Test(lda_wordprobs != null);
double last_term_prob = 0;
for (int t = 0; t < 5 && t < lda.NUM_WORDS; ++t)
{
WordProbability lda_node = lda_wordprobs[t];
ASSERT.Test(lda_node != null);
if (last_term_prob / lda_node.prob > 10)
{
if (stop_at_word_probability_jump)
{
break;
}
else
{
sb.Append(" // ");
}
}
last_term_prob = lda_node.prob;
sb.Append(String.Format("{0}", words[lda_node.word]));
sb.Append(separator);
}
string description = sb.ToString();
if (description.EndsWith(separator))
{
description = description.Substring(0, description.Length - separator.Length);
}
return(description);
}
public void TestMatchingAndNonMatchingCountRollover()
{
var wp = new WordProbability("aWord", long.MaxValue, long.MaxValue);
try
{
wp.RegisterMatch();
Assert.Fail("Should detect rollover.");
}
catch {}
try
{
wp.RegisterNonMatch();
Assert.Fail("Should detect rollover.");
}
catch {}
}
public void TestCalculateOverallProbability()
{
double prob = 0.3d;
WordProbability wp1 = new WordProbability("myWord1", prob);
WordProbability wp2 = new WordProbability("myWord2", prob);
WordProbability wp3 = new WordProbability("myWord3", prob);
WordProbability[] wps = new WordProbability[] { wp1, wp2, wp3 };
double errorMargin = 0.0001d;
double xy = (prob * prob * prob);
double z = (1 - prob) * (1 - prob) * (1 - prob);
double result = xy / (xy + z);
BayesianClassifier classifier = new BayesianClassifier();
Assert.AreEqual(result, classifier.CalculateOverallProbability(wps), errorMargin);
}
public void TestCalculateOverallProbability()
{
var prob = 0.3d;
var wp1 = new WordProbability("myWord1", prob);
var wp2 = new WordProbability("myWord2", prob);
var wp3 = new WordProbability("myWord3", prob);
var wps = new[] { wp1, wp2, wp3 };
var errorMargin = 0.0001d;
var xy = (prob * prob * prob);
var z = (1 - prob) * (1 - prob) * (1 - prob);
var result = xy / (xy + z);
var classifier = new BayesianClassifier();
Assert.AreEqual(result, classifier.CalculateOverallProbability(wps), errorMargin);
}
public void TestAccessors()
{
WordProbability wp = null;
wp = new WordProbability(string.Empty, 0.96d);
Assert.AreEqual(string.Empty, wp.Word);
try
{
Assert.AreEqual(0, wp.MatchingCount);
Assert.Fail("Shouldn't be able to obtain matching count when we haven't set them.");
}
catch {}
try
{
Assert.AreEqual(0, wp.NonMatchingCount);
Assert.Fail("Shouldn't be able to obtain non-matchin count when we haven't set them.");
}
catch {}
Assert.AreEqual(0.96d, wp.Probability, 0);
wp = new WordProbability("aWord", 10, 30);
Assert.AreEqual("aWord", wp.Word);
Assert.AreEqual(10, wp.MatchingCount);
Assert.AreEqual(30, wp.NonMatchingCount);
Assert.AreEqual(0.25d, wp.Probability, 0d);
try
{
wp.MatchingCount = -10;
Assert.Fail("Shouldn't be able to set negative MatchingCount.");
}
catch {}
try
{
wp.NonMatchingCount = -10;
Assert.Fail("Shouldn't be able to set negative NonMatchingCount.");
}
catch {}
}
public void TestComparer()
{
var method = "TestComparer() ";
WordProbability wp = null;
WordProbability wp2 = null;
wp = new WordProbability("a", 0, 0);
wp2 = new WordProbability("b", 0, 0);
try
{
wp.CompareTo(new object());
Assert.Fail("Shouldn't be able to compare to objects other than WordProbability.");
}
catch {}
Debug.WriteLine(method + "wp.Probability " + wp.Probability);
Debug.WriteLine(method + "wp2.Probability " + wp2.Probability);
Assert.IsTrue(wp.CompareTo(wp2) < 0);
Assert.IsTrue(wp2.CompareTo(wp) > 0);
}
public void TestCalculateProbability()
{
WordProbability wp = null;
wp = new WordProbability(string.Empty, 10, 10);
Assert.AreEqual(IClassifierConstants.NEUTRAL_PROBABILITY, wp.Probability, 0);
wp = new WordProbability(string.Empty, 20, 10);
Assert.AreEqual(0.66, wp.Probability, 0.01);
wp = new WordProbability(string.Empty, 30, 10);
Assert.AreEqual(0.75, wp.Probability, 0);
wp = new WordProbability(string.Empty, 10, 20);
Assert.AreEqual(0.33, wp.Probability, 0.01);
wp = new WordProbability(string.Empty, 10, 30);
Assert.AreEqual(0.25, wp.Probability, 0);
wp = new WordProbability(string.Empty, 10, 0);
Assert.AreEqual(IClassifierConstants.UPPER_BOUND, wp.Probability, 0);
wp = new WordProbability(string.Empty, 100, 1);
Assert.AreEqual(IClassifierConstants.UPPER_BOUND, wp.Probability, 0);
wp = new WordProbability(string.Empty, 1000, 1);
Assert.AreEqual(IClassifierConstants.UPPER_BOUND, wp.Probability, 0);
wp = new WordProbability(string.Empty, 0, 10);
Assert.AreEqual(IClassifierConstants.LOWER_BOUND, wp.Probability, 0);
wp = new WordProbability(string.Empty, 1, 100);
Assert.AreEqual(IClassifierConstants.LOWER_BOUND, wp.Probability, 0);
wp = new WordProbability(string.Empty, 1, 1000);
Assert.AreEqual(IClassifierConstants.LOWER_BOUND, wp.Probability, 0);
}
