public DataTable PKAnalysesToDataTable(PopulationSimulationPKAnalyses pkAnalyses, IModelCoreSimulation simulation)
{
var dataTable = new DataTable(simulation.Name);
dataTable.AddColumn <int>(INDIVIDUAL_ID);
dataTable.AddColumn <string>(QUANTITY_PATH);
dataTable.AddColumn <string>(PARAMETER);
dataTable.AddColumn <string>(VALUE);
dataTable.AddColumn <string>(UNIT);
dataTable.BeginLoadData();
foreach (var quantityPKParameter in pkAnalyses.All())
{
var quantityPath = quantityPKParameter.QuantityPath;
var molWeight = simulation.MolWeightFor(quantityPath);
var pkParameter = _pkParameterRepository.FindByName(quantityPKParameter.Name);
var quantityPKParameterContext = new QuantityPKParameterContext(quantityPKParameter, molWeight);
var mergedDimension = _dimensionFactory.MergedDimensionFor(quantityPKParameterContext);
var unit = mergedDimension.UnitOrDefault(pkParameter.DisplayUnit);
quantityPKParameter.ValueCache.KeyValues.Each(kv =>
{
var row = dataTable.NewRow();
row[INDIVIDUAL_ID] = kv.Key;
row[QUANTITY_PATH] = inQuote(quantityPath);
row[PARAMETER] = inQuote(pkParameter.Name);
row[VALUE] = mergedDimension.BaseUnitValueToUnitValue(unit, kv.Value).ConvertedTo <string>();
row[UNIT] = unit.Name;
dataTable.Rows.Add(row);
});
}
dataTable.EndLoadData();
return(dataTable);
}
public void Visit(PopulationSimulationPKAnalyses populationSimulationPKAnalyses)
{
var allQuantityPKAnalysis = populationSimulationPKAnalyses.All().ToList();
populationSimulationPKAnalyses.Clear();
allQuantityPKAnalysis.Each(x =>
{
x.Name = ConvertPKParameterName(x.Name);
populationSimulationPKAnalyses.AddPKAnalysis(x);
});
_converted = true;
}
public void should_exclude_the_norm_parameters()
{
_popAnalaysis.All().Count().ShouldBeEqualTo(1);
_popAnalaysis.PKParameterFor("Liver|Cell|Drug|Concentration", _p1.Name).Values[0].ShouldBeEqualTo(10f);
_popAnalaysis.HasPKParameterFor("Liver|Cell|Drug|Concentration", _p2.Name).ShouldBeFalse();
}
public void should_return_a_pk_analysis_object_with_the_expected_data()
{
_result.All().Count().ShouldBeEqualTo(2);
_result.HasPKParameterFor(_outputPath, "My PK-Parameter").ShouldBeTrue();
_result.HasPKParameterFor(_outputPath, "C_max").ShouldBeTrue();
}
public void should_have_added_the_pk_parameters_to_the_existing_pk_parameters()
{
_pkAnalysis.All().ShouldContain(_pkParameter1, _pkParameter2);
}
public void should_also_return_value_for_the_dynamic_parameters()
{
_popAnalysis.All().Count().ShouldBeEqualTo(2);
_popAnalysis.PKParameterFor("Liver|Cell|Drug|Concentration", _p1.Name).ValueFor(0).ShouldBeEqualTo(10f);
_popAnalysis.PKParameterFor("Liver|Cell|Drug|Concentration", _userDefinedParameter1.Name).ValueFor(0).ShouldBeEqualTo(30f);
}