/// <summary> /// calculates the hash code for this object /// </summary> // ReSharper disable once FunctionComplexityOverflow private int CalculateHashCode() { var hashCode = Start.GetHashCode(); if (Chromosome != null) { hashCode ^= Chromosome.GetHashCode(); } if (ID != null) { hashCode ^= ID.GetHashCode(); } if (AlleleOrigins != null) { hashCode ^= AlleleOrigins.GetHashCode(); } if (AltAllele != null) { hashCode ^= AltAllele.GetHashCode(); } if (MedGenIDs != null) { hashCode ^= MedGenIDs.GetHashCode(); } if (OmimIDs != null) { hashCode ^= OmimIDs.GetHashCode(); } if (OrphanetIDs != null) { hashCode ^= OrphanetIDs.GetHashCode(); } if (Phenotypes != null) { hashCode ^= Phenotypes.GetHashCode(); } if (ReferenceAllele != null) { hashCode ^= ReferenceAllele.GetHashCode(); } if (Significance != null) { hashCode ^= Significance.GetHashCode(); } return(hashCode); }
private List <string[]> GetValues() { var values = new List <string[]> { //the exact order of adding values has to be preserved. the order is dictated by the json schema new[] { Id }, new[] { VariationId }, new[] { ClinVarCommon.ReviewStatusStrings[ReviewStatus] }, AlleleOrigins?.ToArray(), new[] { ClinVarCommon.NormalizeAllele(RefAllele) }, new[] { ClinVarCommon.NormalizeAllele(AltAllele) }, Phenotypes?.ToArray(), MedGenIds?.ToArray(), OmimIds?.ToArray(), OrphanetIds?.ToArray(), Significances, new[] { new DateTime(LastUpdatedDate).ToString("yyyy-MM-dd") }, PubmedIds?.OrderBy(x => x).Select(x => x.ToString()).ToArray() }; return(values); }
public Boolean cargarArchivo() { logger.EscribirLog("Cargamos los Fenotipos de PharmaGKB", Logger.Tipo.Informativo, false); logger.EscribirLog("Chequeamos si existe el Archivo " + filePath, Logger.Tipo.Informativo, false); if (!File.Exists(filePath)) { logger.EscribirLog("No existe el Archivo " + filePath, Logger.Tipo.Informativo, false); return(false); } foreach (string Phenotypes in File.ReadAllLines(filePath)) { string[] varsa = Phenotypes.Split('\t'); if (varsa[0] != "PharmGKB Accession Id") { Phenotype phenotype = new Phenotype(); phenotype.PharmGKBAccessionId = varsa[0]; phenotype.Name = varsa[1]; string[] AlternateNames = varsa[2].Split(','); foreach (String s in AlternateNames) { if (s.Contains("\"")) { phenotype.AlternateNames.Add(s.Split('"')[1]); } else { phenotype.AlternateNames.Add(s); } } string[] CrossReferences = varsa[3].Split(','); foreach (String s in CrossReferences) { if (s.Contains("\"")) { phenotype.CrossReferences.Add(s.Split('"')[1]); } else { phenotype.CrossReferences.Add(s); } } string[] ExtenralVocabulary = varsa[4].Split(','); foreach (String s in ExtenralVocabulary) { if (s.Contains("\"")) { phenotype.ExtenralVocabulary.Add(s.Split('"')[1]); } else { phenotype.ExtenralVocabulary.Add(s); } } LPhenotypes.Add(phenotype); } } logger.EscribirLog("Cargamos " + LPhenotypes.Count + " Fenotipos", Logger.Tipo.Informativo, true); return(true); }