protected override void Context()
{
base.Context();
_compound = new Compound();
var solDim = new Dimension(new BaseDimensionRepresentation(), "Solubility", "m");
solDim.AddUnit(new Unit("cm", 0.01, 0));
_refPhValue = 7;
_solValue = 100;
_gainPerChargeValue = 1000;
A.CallTo(() => _formulaFactory.CreateTableFormula()).Returns(new TableFormula());
var refPh = DomainHelperForSpecs.ConstantParameterWithValue(_refPhValue).WithName(CoreConstants.Parameter.RefpH).WithDimension(DomainHelperForSpecs.NoDimension());
var solubilty = DomainHelperForSpecs.ConstantParameterWithValue(_solValue).WithName(CoreConstants.Parameter.SolubilityAtRefpH).WithDimension(solDim);
var gainPerCharge = DomainHelperForSpecs.ConstantParameterWithValue(_gainPerChargeValue).WithName(CoreConstants.Parameter.SolubilityGainPerCharge).WithDimension(DomainHelperForSpecs.NoDimension());
_solubility_pKa_pH_Factor = new PKSimParameter().WithName(CoreConstants.Parameter.SOLUBILITY_P_KA__P_H_FACTOR);
_solubility_pKa_pH_Factor.Formula = new ExplicitFormula("10 * (pH +1)");
_solubility_pKa_pH_Factor.Formula.AddObjectPath(new FormulaUsablePath(new[] { ObjectPath.PARENT_CONTAINER, CoreConstants.Parameter.RefpH }).WithAlias("pH"));
_compound.Add(refPh);
_compound.Add(solubilty);
_compound.Add(gainPerCharge);
_compound.Add(_solubility_pKa_pH_Factor);
_solubilityAlternative = new ParameterAlternative();
_solubilityAlternative.Add(refPh);
_solubilityAlternative.Add(solubilty);
_solubilityAlternative.Add(gainPerCharge);
var solubilityAlternativeGroup = new ParameterAlternativeGroup();
solubilityAlternativeGroup.AddAlternative(_solubilityAlternative);
_compound.AddParameterAlternativeGroup(solubilityAlternativeGroup);
}
public Compound Create()
{
var compound = new Compound();
compound.Add(DomainHelperForSpecs.ConstantParameterWithValue(2).WithName(CoreConstants.Parameters.EFFECTIVE_MOLECULAR_WEIGHT));
compound.Add(DomainHelperForSpecs.ConstantParameterWithValue(4).WithName(CoreConstants.Parameters.LIPOPHILICITY));
compound.Add(DomainHelperForSpecs.ConstantParameterWithValue(8).WithName(CoreConstants.Parameters.PERMEABILITY));
compound.Add(DomainHelperForSpecs.ConstantParameterWithValue(1).WithName(CoreConstants.Parameters.IS_SMALL_MOLECULE));
return(compound);
}
public Compound Create()
{
var compound = new Compound();
compound.Add(DomainHelperForSpecs.ConstantParameterWithValue(2).WithName(CoreConstants.Parameter.MolWeightEff));
compound.Add(DomainHelperForSpecs.ConstantParameterWithValue(4).WithName(CoreConstants.Parameter.Lipophilicity));
compound.Add(DomainHelperForSpecs.ConstantParameterWithValue(8).WithName(CoreConstants.Parameter.Permeability));
compound.Add(DomainHelperForSpecs.ConstantParameterWithValue(1).WithName(CoreConstants.Parameter.IS_SMALL_MOLECULE));
return(compound);
}
protected override void Context()
{
base.Context();
_solubilityGroup = new ParameterAlternativeGroup {
Name = CoreConstants.Groups.COMPOUND_SOLUBILITY
};
_refPhParameter = DomainHelperForSpecs.ConstantParameterWithValue(10).WithName(CoreConstants.Parameters.REFERENCE_PH);
_solubilityRefPh = DomainHelperForSpecs.ConstantParameterWithValue(10).WithName(CoreConstants.Parameters.SOLUBILITY_AT_REFERENCE_PH);
_solubilityTable = DomainHelperForSpecs.ConstantParameterWithValue(20).WithName(CoreConstants.Parameters.SOLUBILITY_TABLE);
_solubilityGainParameter = DomainHelperForSpecs.ConstantParameterWithValue(20).WithName(CoreConstants.Parameters.SOLUBILITY_GAIN_PER_CHARGE);
var compound = new Compound();
_solubilityAlternativeNameParameter = A.Fake <ISolubilityAlternativeNamePresenter>();
A.CallTo(() => _applicationController.Start <ISolubilityAlternativeNamePresenter>()).Returns(_solubilityAlternativeNameParameter);
A.CallTo(() => _solubilityAlternativeNameParameter.Edit(_solubilityGroup)).Returns(true);
A.CallTo(() => _solubilityAlternativeNameParameter.Name).Returns("new name");
_solubilityAlternativeNameParameter.CreateAsTable = true;
_newTableAlternative = new ParameterAlternative {
_solubilityRefPh, _solubilityTable, _refPhParameter, _solubilityGainParameter
};
A.CallTo(() => _parameterAlternativeFactory.CreateTableAlternativeFor(_solubilityGroup, CoreConstants.Parameters.SOLUBILITY_TABLE)).Returns(_newTableAlternative);
compound.Add(_solubilityGroup);
_solubilityTableFormula = new TableFormula();
_solubilityTable.Formula = _solubilityTableFormula;
}
/// <summary>
/// The orientation of the non-tranformed LumpedPort and the normal
/// direction of its excitation vector should match.
/// </summary>
//[Fact(Skip="Disable output while developing other test cases")]
public void LumpedPort_WithoutTransformation_NormalDirectionCorrect()
{
Compound excitation = new Compound("Excitation");
LumpedPort lumpedPort = new LumpedPort(0, 1, 50, new Vector3D(), new Vector3D(1, 1, 1), ENormDir.X);
excitation.Add(lumpedPort);
Assert.True(false, "Test not implemented yet");
}
private void updatePartialProcessKineticAccordingToTemplate(Compound compound)
{
foreach (var partialProcess in compound.AllProcesses <PartialProcess>().ToList())
{
if (partialProcess.InternalName.Contains("Hill"))
{
continue;
}
//remove the old partial process that needs to be updated
compound.RemoveChild(partialProcess);
var templateProcess = _compoundProcessRepository.All <PartialProcess>().FindByName(partialProcess.InternalName);
bool wasInhibitionProcess = false;
//process does not exist anymore such as Inhibition. convert to non inhibition
if (templateProcess == null)
{
var processInternalName = partialProcess.InternalName.Replace("CompetitiveInhibition_", string.Empty);
templateProcess = _compoundProcessRepository.All <PartialProcess>().FindByName(processInternalName);
wasInhibitionProcess = true;
}
if (templateProcess == null)
{
continue;
}
//This updates all local properites from the parital process such as molecule name etc..
var cloneDbProcess = _cloner.Clone(templateProcess);
cloneDbProcess.UpdatePropertiesFrom(partialProcess, _cloner);
compound.Add(cloneDbProcess);
if (wasInhibitionProcess)
{
cloneDbProcess.Description = PKSimConstants.Warning.StaticInhibitionRemovedFromApplication(templateProcess.Description);
cloneDbProcess.InternalName = templateProcess.InternalName;
}
foreach (var parameter in partialProcess.AllParameters())
{
var newParameter = cloneDbProcess.Parameter(parameter.Name);
if (newParameter == null)
{
continue;
}
//make sure we have the same parameter id as before to ensure smooth update commit
newParameter.Id = parameter.Id;
_parameterSetUpdater.UpdateValue(parameter, newParameter);
//this needs to be done after udpdate value as the Update value also sets the origin
newParameter.Origin.ParameterId = parameter.Origin.ParameterId;
}
}
}
private void VisitPorts(CyPhyInterfaces.RFPort currentPort, CyPhyInterfaces.RFPort prevPort)
{
if (m_rfModelFound)
{
return;
}
if (CodeGenerator.verbose)
{
Logger.WriteInfo("Current port: " + currentPort.Name
+ " (" + currentPort.ID + ") parent: " + currentPort.ParentContainer.Name);
}
if (currentPort.ParentContainer.Kind == "RFModel")
{
m_rfModelFound = true;
// Add excitation
CyPhyInterfaces.RFModel rfModel = CyPhyClasses.RFModel.Cast(currentPort.ParentContainer.Impl);
CSXCAD.Ara.Module m = m_endo.GetModule(m_slotIndex);
CSXCAD.Compound excitation = new Compound(null, "Excitation",
new Vector3D(rfModel.Attributes.X, rfModel.Attributes.Y, m.PCB.Thickness),
(double)rfModel.Attributes.Rotation * Math.PI / 2);
excitation.Add(new LumpedPort(100, 1, 50.0,
new Vector3D(0, 0, -m.PCB.Thickness),
new Vector3D(0, 0, 0),
ENormDir.Z, true));
m.PCB.Add(excitation);
return;
}
var portQuery = (prevPort == null) ?
(from p in currentPort.SrcConnections.PortCompositionCollection
select p.SrcEnd).Union(
from p in currentPort.DstConnections.PortCompositionCollection
select p.DstEnd) :
(from p in currentPort.SrcConnections.PortCompositionCollection
where p.SrcEnd.ID != prevPort.ID
select p.SrcEnd).Union(
from p in currentPort.DstConnections.PortCompositionCollection
where p.DstEnd.ID != prevPort.ID
select p.DstEnd);
foreach (CyPhyClasses.RFPort nextPort in portQuery)
{
VisitPorts(nextPort, currentPort);
}
}
public override bool doEvent(object caller, MouseButtonEventArgs e)
{
if (e.ButtonPressed && selectedAtom != null && caller is Compound)
{
Compound gui = (Compound)caller;
docked.Remove(selectedAtom);
gui.Add(selectedAtom, false);
selectedAtom = null;
decompressedSize = 0;
}
return(true);
}
private void addNewParameters(Compound compound)
{
var defaultCompound = _compoundFactory.Create();
var plasmaProteinBindingPartner = _cloner.Clone(defaultCompound.Parameter(CoreConstants.Parameter.PLASMA_PROTEIN_BINDING_PARTNER));
plasmaProteinBindingPartner.Value = (int)PlasmaProteinPartner.Unknown;
compound.Add(plasmaProteinBindingPartner);
compound.Add(_cloner.Clone(defaultCompound.Parameter(ConverterConstants.Parameter.Kass_FcRn)));
compound.Add(_cloner.Clone(defaultCompound.Parameter(ConverterConstants.Parameter.Kd_FcRn_pls_int)));
compound.Add(_cloner.Clone(defaultCompound.Parameter(ConverterConstants.Parameter.BP_AGP)));
compound.Add(_cloner.Clone(defaultCompound.Parameter(ConverterConstants.Parameter.BP_ALBUMIN)));
compound.Add(_cloner.Clone(defaultCompound.Parameter(ConverterConstants.Parameter.BP_UNKNOWN)));
compound.Add(_cloner.Clone(defaultCompound.Parameter(ConverterConstants.Parameter.CalculatedSpecificIntestinalPermeability)));
var oldKdFCRn = compound.Parameter("Kd (FcRn)");
oldKdFCRn.Name = ConverterConstants.Parameter.Kd_FcRn_Endo;
}
protected override void Context()
{
base.Context();
_solubilityGroup = new ParameterAlternativeGroup {
Name = CoreConstants.Groups.COMPOUND_SOLUBILITY
};
var compound = new Compound();
_solubilityAlternativeNameParameter = A.Fake <ISolubilityAlternativeNamePresenter>();
A.CallTo(() => _applicationController.Start <ISolubilityAlternativeNamePresenter>()).Returns(_solubilityAlternativeNameParameter);
A.CallTo(() => _solubilityAlternativeNameParameter.Edit(_solubilityGroup)).Returns(true);
A.CallTo(() => _solubilityAlternativeNameParameter.Name).Returns("new name");
_solubilityAlternativeNameParameter.CreateAsTable = true;
_newTableAlternative = new ParameterAlternative();
A.CallTo(() => _compoundAlternativeTask.CreateSolubilityTableAlternativeFor(_solubilityGroup, "new name")).Returns(_newTableAlternative);
compound.Add(_solubilityGroup);
_solubilityTableFormula = new TableFormula();
}
protected override void Context()
{
base.Context();
_solubilityGroup = new ParameterAlternativeGroup {
Name = CoreConstants.Groups.COMPOUND_SOLUBILITY
};
_refPhParameter = DomainHelperForSpecs.ConstantParameterWithValue(10).WithName(CoreConstants.Parameters.REFERENCE_PH);
_solubilityRefPh = DomainHelperForSpecs.ConstantParameterWithValue(10).WithName(CoreConstants.Parameters.SOLUBILITY_AT_REFERENCE_PH);
_solubilityTable = DomainHelperForSpecs.ConstantParameterWithValue(20).WithName(CoreConstants.Parameters.SOLUBILITY_TABLE);
_solubilityGainParameter = DomainHelperForSpecs.ConstantParameterWithValue(20).WithName(CoreConstants.Parameters.SOLUBILITY_GAIN_PER_CHARGE);
var compound = new Compound();
_newTableAlternative = new ParameterAlternative {
_solubilityRefPh, _solubilityTable, _refPhParameter, _solubilityGainParameter
};
A.CallTo(() => _parameterAlternativeFactory.CreateTableAlternativeFor(_solubilityGroup, CoreConstants.Parameters.SOLUBILITY_TABLE)).Returns(_newTableAlternative);
compound.Add(_solubilityGroup);
_solubilityTableFormula = new TableFormula();
_solubilityTable.Formula = _solubilityTableFormula;
}
public void Initialize()
{
// Ara Endo
endo = new CSXCAD.Ara.Endo();
CSXCAD.Ara.Module araModule = null;
switch (moduleSize)
{
case "1x2":
araModule = new CSXCAD.Ara.Module_1x2("dut-module");
break;
case "2x2":
araModule = new CSXCAD.Ara.Module_2x2("dut-module");
break;
default:
break;
}
endo.AddModule(slotIndex, araModule);
antenna = new CSXCAD.XmlCompound(null, "dut-antenna", new Vector3D(x, y, thickness), rot);
antenna.Parse(XElement.Load(inputFile));
araModule.PCB.Add(antenna);
// Excitation
CSXCAD.Compound excitation = new Compound(null, "Excitation", new Vector3D(x, y, thickness), rot);
excitation.Add(new LumpedPort(100,
1,
impedance,
new Vector3D(0, 0, -araModule.PCB.Thickness),
new Vector3D(0, 0, 0),
ENormDir.Z,
true));
araModule.PCB.Add(excitation);
}
static void TestAraPhone()
{
Endo e = new Endo(null, "endo", new Vector3D(0, 0, 0), 0);
Module_1x2 m1 = new Module_1x2("m1");
Module_2x2 m2 = new Module_2x2("m2");
Module_1x2 m4 = new Module_1x2("m4");
Module_2x2 m5 = new Module_2x2("m5");
Module_1x2 m6 = new Module_1x2("m6");
Module_1x2 m7 = new Module_1x2("m7");
XmlCompound u1 = new XmlCompound(m1, "u1", new Vector3D(0, 0, 0), 0);
u1.Parse(XElement.Load("Box.xml"));
u1.Transformations.Add(new TTranslate(20, 3, 3));
m5.Add(u1);
//e.AddModule(1, m1);
//e.AddModule(3, m2);
//e.AddModule(4, m4);
e.AddModule(5, m5);
//e.AddModule(6, m6);
//e.AddModule(7, m7);
// Phantom
Compound headPhantom = new Compound("head-phantom");
Dielectric skinMaterial = new Dielectric("skin", 50, kappa: 0.65, density: 1100);
skinMaterial.FillColor = new Material.Color(245, 215, 205, 54);
skinMaterial.EdgeColor = new Material.Color(255, 235, 217, 250);
Sphere skin = new Sphere(null, skinMaterial, 11, new Vector3D(), 1);
skin.Transformations.Add(new TScale(80, 100, 80));
headPhantom.Add(skin);
Dielectric boneMaterial = new Dielectric("bone", 13, kappa: 0.1, density: 2000);
boneMaterial.FillColor = new Material.Color(227, 227, 227, 54);
boneMaterial.EdgeColor = new Material.Color(202, 202, 202, 250);
Sphere bone = new Sphere(null, boneMaterial, 12, new Vector3D(), 1);
bone.Transformations.Add(new TScale(75, 95, 75));
headPhantom.Add(bone);
Dielectric brainMaterial = new Dielectric("brain", 60, kappa: 0.7, density: 1040);
brainMaterial.FillColor = new Material.Color(255, 85, 127, 54);
brainMaterial.EdgeColor = new Material.Color(71, 222, 179, 250);
Sphere brain = new Sphere(null, brainMaterial, 13, new Vector3D(), 1);
brain.Transformations.Add(new TScale(65, 85, 65));
headPhantom.Add(brain);
headPhantom.Transformations.Add(new TTranslate(33, 70, 90));
Compound s = new Compound("space");
s.Add(e);
s.Add(headPhantom);
RectilinearGrid g = new SimpleGrid_6x3();
g.ZLines.Add(170);
double airBox = 50;
double maxRes = 5;
double ratio = 1.5;
g.AddAirbox(airBox);
g.SmoothMesh(maxRes, ratio);
s.Add(new SARBox("SAR", 1200e6, new Vector3D(), new Vector3D(20, 20, 20)));
s.Add(new NF2FFBox("nf2ff",
new Vector3D(g.XLines.First(), g.YLines.First(), g.ZLines.First()),
new Vector3D(g.XLines.Last(), g.YLines.Last(), g.ZLines.Last())));
s.Add(new LumpedPort(100, 1, 50.0,
new Vector3D(-0.1, -0.1, -1.25),
new Vector3D(+0.1, +0.1, +1.25), ENormDir.Z, true));
Simulation fdtd = new Simulation();
fdtd.Excitation = new GaussExcitation(1e9, 1.5e9);
g.AddPML(10);
XDocument doc = new XDocument(
new XDeclaration("1.0", "utf-8", "yes"),
new XComment("Test XML file for CyPhy generated openEMS simulations"),
new XElement("openEMS",
fdtd.ToXElement(),
new XElement("ContinuousStructure",
new XAttribute("CoordSystem", 0),
s.ToXElement(),
g.ToXElement()
)
)
);
doc.Save("CSXTest.xml");
}
public void GenerateSarSimulationInput(string outputDirectory)
{
Compound simulationSpace = new Compound("space");
Compound solidSpace = new Compound("solid-space");
simulationSpace.Add(solidSpace);
solidSpace.Add(endo);
var headPhantom = new CSXCAD.Ara.HeadPhantom();
headPhantom.Transformations.Add(new TRotateX(Math.PI / 2));
headPhantom.Transformations.Add(new TTranslate(32.0, 80.0, -headPhantom.Width / 2 - 7.0)); // TODO: Make endo width/height accessibles
solidSpace.Add(headPhantom);
double airBox = 40;
double envResolution = Math.Round(lambdaMin / 20 / unit);
double maxRatio = 1.5;
RectilinearGrid grid = new BoundingGrid_6x3();
Vector3D dutPosition = new Vector3D(
antenna.AbsoluteTransformation.X,
antenna.AbsoluteTransformation.Y,
antenna.AbsoluteTransformation.Z);
solidSpace.Transformations.Add(new TTranslate(-dutPosition));
grid.Move(-dutPosition);
grid.Add(new Vector3D(0, 0, 0));
grid.ZLines.Add(-(antenna.Parent as CSXCAD.Ara.PCB).Thickness);
grid.Sort();
grid.SmoothMesh(dutResolution, maxRatio);
grid.Add(headPhantom.BoundingBox.P1);
grid.Add(headPhantom.BoundingBox.P2);
grid.SmoothMesh(sarResolution, maxRatio);
grid.AddAirbox(airBox);
grid.SmoothMesh(envResolution, maxRatio);
simulationSpace.Add(new SARBox("SAR", frequency,
new Vector3D(headPhantom.XGridPoints.First(), headPhantom.YGridPoints.First(), headPhantom.ZGridPoints.First()),
new Vector3D(headPhantom.XGridPoints.Last(), headPhantom.YGridPoints.Last(), headPhantom.ZGridPoints.Last())));
simulationSpace.Add(new NF2FFBox("nf2ff",
new Vector3D(grid.XLines.First(), grid.YLines.First(), grid.ZLines.First()),
new Vector3D(grid.XLines.Last(), grid.YLines.Last(), grid.ZLines.Last()),
lambdaMin / 15 / unit));
grid.AddPML(8);
Simulation fdtd = new Simulation();
fdtd.Excitation = new GaussExcitation(frequency, bandwidth);
// Export
XDocument doc = new XDocument(
new XDeclaration("1.0", "utf-8", "yes"),
new XComment("CyPhy generated openEMS simulation file"),
new XElement("openEMS",
fdtd.ToXElement(),
new XElement("ContinuousStructure",
new XAttribute("CoordSystem", 0),
simulationSpace.ToXElement(),
grid.ToXElement()
)
)
);
System.IO.Directory.CreateDirectory(Path.Combine(outputDirectory));
string openEmsInput = Path.Combine(outputDirectory, "openEMS_input.xml");
doc.Save(openEmsInput);
string nf2ffInput = Path.Combine(outputDirectory, "nf2ff_input.xml");
var nf2ff = new Postprocess.NF2FF(frequency);
nf2ff.ToXDocument().Save(nf2ffInput);
File.WriteAllText(Path.Combine(outputDirectory, "run_sar.cmd"), AraRFAnalysis.Properties.Resources.run_sar);
}
public void onLoadRom()
{
gui.Add(new LoadRom(gui), true);
}
private XDocument BuildDipoleSarXml()
{
double unit = 1e-3;
double f0 = 1e9;
double c0 = 299792458.0;
double lambda0 = c0 / f0;
double fStop = 1.5e9;
double lambdaMin = c0 / fStop;
// Simulation engine
Simulation fdtd = new Simulation();
fdtd.Excitation = new GaussExcitation(0, fStop); // possible typo in Dipole_SAR.xml
// Simulation space
Compound s = new Compound("space");
// Dipole antenna
double dipoleLength = 0.46 * lambda0 / unit;
s.Add(new Box(null, new Metal("Dipole"), 1,
new Vector3D(0, 0, -dipoleLength / 2), new Vector3D(0, 0, dipoleLength / 2)));
// Phantom
Compound headPhantom = new Compound("head-phantom");
Dielectric skinMaterial = new Dielectric("skin", 50, kappa: 0.65, density: 1100);
skinMaterial.FillColor = new Material.Color(245, 215, 205, 250);
skinMaterial.EdgeColor = new Material.Color(255, 235, 217, 250);
Sphere skin = new Sphere(null, skinMaterial, 11, new Vector3D(), 1);
skin.Transformations.Add(new TScale(80, 100, 100));
headPhantom.Add(skin);
Dielectric boneMaterial = new Dielectric("headbone", 13, kappa: 0.1, density: 2000);
boneMaterial.FillColor = new Material.Color(227, 227, 227, 250);
boneMaterial.EdgeColor = new Material.Color(202, 202, 202, 250);
Sphere bone = new Sphere(null, boneMaterial, 12, new Vector3D(), 1);
bone.Transformations.Add(new TScale(75, 95, 95));
headPhantom.Add(bone);
Dielectric brainMaterial = new Dielectric("brain", 60, kappa: 0.7, density: 1040);
brainMaterial.FillColor = new Material.Color(255, 85, 127, 250);
brainMaterial.EdgeColor = new Material.Color(71, 222, 179, 250);
Sphere brain = new Sphere(null, brainMaterial, 13, new Vector3D(), 1);
brain.Transformations.Add(new TScale(65, 85, 85));
headPhantom.Add(brain);
headPhantom.Transformations.Add(new TTranslate(100, 0, 0));
s.Add(headPhantom);
// Excitation
double meshResAir = lambdaMin / 20 / unit;
double meshResPhantom = 2.5;
LumpedPort lp = new LumpedPort(100, 1, 50.0,
new Vector3D(-0.1, -0.1, -meshResPhantom / 2),
new Vector3D(+0.1, +0.1, +meshResPhantom / 2), ENormDir.Z, true);
s.Add(lp);
// Grid
RectilinearGrid g = new RectilinearGrid();
g.XLines.Add(0);
g.YLines.Add(0);
foreach (double z in new double[] { -1.0 / 3, 2.0 / 3 })
{
g.ZLines.Add(-dipoleLength / 2 - meshResPhantom * z);
g.ZLines.Add(+dipoleLength / 2 + meshResPhantom * z);
}
foreach (Sphere sp in new Sphere[] { skin, bone, brain })
{
g.XLines.Add(sp.AbsoluteTransformation.Matrix[0, 3] + sp.AbsoluteTransformation.Matrix[0, 0]);
g.XLines.Add(sp.AbsoluteTransformation.Matrix[0, 3] - sp.AbsoluteTransformation.Matrix[0, 0]);
g.YLines.Add(sp.AbsoluteTransformation.Matrix[1, 3] + sp.AbsoluteTransformation.Matrix[1, 1]);
g.YLines.Add(sp.AbsoluteTransformation.Matrix[1, 3] - sp.AbsoluteTransformation.Matrix[1, 1]);
g.ZLines.Add(sp.AbsoluteTransformation.Matrix[2, 3] + sp.AbsoluteTransformation.Matrix[2, 2]);
g.ZLines.Add(sp.AbsoluteTransformation.Matrix[2, 3] - sp.AbsoluteTransformation.Matrix[2, 2]);
}
g.ZLines.Add(-meshResPhantom / 2); // port
g.ZLines.Add(+meshResPhantom / 2);
// Mesh over dipole and phantom
g.SmoothMesh(meshResPhantom);
g.XLines.Add(-200);
g.XLines.Add(250 + 100);
g.YLines.Add(-250);
g.YLines.Add(+250);
g.ZLines.Add(-250);
g.ZLines.Add(+250);
g.SmoothMesh(meshResAir, 1.2);
s.Add(new SARBox("SAR", f0, new Vector3D(-10, -100, -100), new Vector3D(180, 100, 100)));
s.Add(new NF2FFBox("nf2ff",
new Vector3D(g.XLines.First(), g.YLines.First(), g.ZLines.First()),
new Vector3D(g.XLines.Last(), g.YLines.Last(), g.ZLines.Last()),
lambdaMin / 15 / unit));
g.AddPML(10);
g.XLines.Sort();
g.YLines.Sort();
g.ZLines.Sort();
// Export
return(new XDocument(
new XDeclaration("1.0", "utf-8", "yes"),
new XComment("Test XML file for CyPhy generated openEMS simulations"),
new XElement("openEMS",
fdtd.ToXElement(),
new XElement("ContinuousStructure",
new XAttribute("CoordSystem", 0),
s.ToXElement(),
g.ToXElement()
)
)
));
}
public void GenerateFarFieldSimulationInput(string outputDirectory)
{
Compound simulationSpace = new Compound("space");
Compound solidSpace = new Compound("solid-space");
simulationSpace.Add(solidSpace);
Compound dut;
if (excludeEndo == true)
{
dut = endo.GetModule(slotIndex);
}
else
{
dut = endo;
}
solidSpace.Add(dut); // modifies dut parent (!)
double airBox = 40;
double maxRes = Math.Round(lambdaMin / 20 / unit);
double maxRatio = 1.5;
RectilinearGrid grid = new RectilinearGrid();
grid.Add(dut.BoundingBox.P1);
grid.Add(dut.BoundingBox.P2);
Vector3D antennaPosition = new Vector3D(
antenna.AbsoluteTransformation.X,
antenna.AbsoluteTransformation.Y,
antenna.AbsoluteTransformation.Z);
solidSpace.Transformations.Add(new TTranslate(-antennaPosition));
grid.Move(-antennaPosition);
grid.Add(new Vector3D(0, 0, 0));
grid.ZLines.Add(-(antenna.Parent as CSXCAD.Ara.PCB).Thickness);
grid.Sort();
grid.SmoothMesh(dutResolution, maxRatio);
grid.AddAirbox(airBox);
grid.SmoothMesh(maxRes, maxRatio);
simulationSpace.Add(new NF2FFBox("nf2ff",
new Vector3D(grid.XLines.First(), grid.YLines.First(), grid.ZLines.First()),
new Vector3D(grid.XLines.Last(), grid.YLines.Last(), grid.ZLines.Last()),
lambdaMin / 15 / unit));
grid.AddPML(8);
Simulation fdtd = new Simulation();
fdtd.Excitation = new GaussExcitation(frequency, bandwidth);
// Export
XDocument doc = new XDocument(
new XDeclaration("1.0", "utf-8", "yes"),
new XComment("CyPhy generated openEMS simulation file"),
new XElement("openEMS",
fdtd.ToXElement(),
new XElement("ContinuousStructure",
new XAttribute("CoordSystem", 0),
simulationSpace.ToXElement(),
grid.ToXElement()
)
)
);
if (dut is CSXCAD.Ara.Module)
{
dut.Parent = endo;
}
System.IO.Directory.CreateDirectory(outputDirectory);
string openEmsInput = Path.Combine(outputDirectory, "openEMS_input.xml");
doc.Save(openEmsInput);
string nf2ffInput = Path.Combine(outputDirectory, "nf2ff_input.xml");
var nf2ff = new Postprocess.NF2FF(frequency);
nf2ff.ToXDocument().Save(nf2ffInput);
File.WriteAllText(Path.Combine(outputDirectory, "run_farfield.cmd"), AraRFAnalysis.Properties.Resources.run_farfield);
}
private void GenerateSarSimulationInput()
{
// Constants
double unit = 1e-3;
double c0 = 299792458.0;
double lambda0 = c0 / m_f0;
double f_c = 500e6;
double lambdaMin = c0 / (m_f0 + f_c);
Compound simulationSpace = new Compound("space");
Compound solidSpace = new Compound("solid-space");
simulationSpace.Add(solidSpace);
solidSpace.Add(m_endo);
var headPhantom = new CSXCAD.Ara.HeadPhantom();
headPhantom.Transformations.Add(new TRotateX(Math.PI / 2));
headPhantom.Transformations.Add(new TTranslate(32.0, 80.0, -headPhantom.Width / 2 - 7.0)); // TODO: Make endo width/height accessibles
solidSpace.Add(headPhantom);
// Set up simulation grid, nf2ff and SAR
Logger.WriteInfo("Constructing FDTD simulation grid...");
double airBox = 40;
double envResolution = Math.Round(lambdaMin / 20 / unit);
double maxRatio = 1.5;
RectilinearGrid grid = new BoundingGrid_6x3();
#region openems_workaround
// openEMS v0.0.31 seems to handle transformations on excitation (lumped port),
// SAR and NF2FF simulation components incorrectly.
// Applied workarounds:
// 1. The entire design is moved so that the antenna feedpoint is in the origin
// 2. The SAR and NF2FF boxes are added late, w/o transformations
Vector3D dutPosition = new Vector3D(
m_antenna.AbsoluteTransformation.X,
m_antenna.AbsoluteTransformation.Y,
m_antenna.AbsoluteTransformation.Z);
solidSpace.Transformations.Add(new TTranslate(-dutPosition));
grid.Move(-dutPosition);
grid.Add(new Vector3D(0, 0, 0));
grid.ZLines.Add(-(m_antenna.Parent as CSXCAD.Ara.PCB).Thickness);
grid.Sort();
grid.SmoothMesh(m_dutResolution, maxRatio);
grid.Add(headPhantom.BoundingBox.P1);
grid.Add(headPhantom.BoundingBox.P2);
grid.SmoothMesh(m_sarResolution, maxRatio);
grid.AddAirbox(airBox);
grid.SmoothMesh(envResolution, maxRatio);
simulationSpace.Add(new SARBox("SAR", m_f0,
new Vector3D(headPhantom.XGridPoints.First(), headPhantom.YGridPoints.First(), headPhantom.ZGridPoints.First()),
new Vector3D(headPhantom.XGridPoints.Last(), headPhantom.YGridPoints.Last(), headPhantom.ZGridPoints.Last())));
simulationSpace.Add(new NF2FFBox("nf2ff",
new Vector3D(grid.XLines.First(), grid.YLines.First(), grid.ZLines.First()),
new Vector3D(grid.XLines.Last(), grid.YLines.Last(), grid.ZLines.Last()),
lambdaMin / 15 / unit));
#endregion
grid.AddPML(8);
Simulation fdtd = new Simulation();
fdtd.Excitation = new GaussExcitation(m_f0, m_fc);
// Export
XDocument doc = new XDocument(
new XDeclaration("1.0", "utf-8", "yes"),
new XComment("CyPhy generated openEMS simulation file"),
new XElement("openEMS",
fdtd.ToXElement(),
new XElement("ContinuousStructure",
new XAttribute("CoordSystem", 0),
simulationSpace.ToXElement(),
grid.ToXElement()
)
)
);
string openEmsInput = Path.Combine(mainParameters.OutputDirectory, "openEMS_input.xml");
doc.Save(openEmsInput);
string nf2ffInput = Path.Combine(mainParameters.OutputDirectory, "nf2ff_input.xml");
var nf2ff = new Postprocess.NF2FF(m_f0);
nf2ff.ToXDocument().Save(nf2ffInput);
}
private void GenerateDirectivitySimulationInput()
{
// Constants
double unit = 1e-3;
double c0 = 299792458.0;
double lambda0 = c0 / m_f0;
double lambdaMin = c0 / (m_f0 + m_fc);
Compound simulationSpace = new Compound("space");
Compound solidSpace = new Compound("solid-space");
simulationSpace.Add(solidSpace);
Compound dut;
if (m_excludeEndo == true)
{
dut = m_endo.GetModule(m_slotIndex);
}
else
{
dut = m_endo;
}
solidSpace.Add(dut); // modifies dut parent (!)
// Set up simulation grid, nf2ff and SAR
Logger.WriteInfo("Constructing FDTD simulation grid...");
double airBox = 40;
double maxRes = Math.Round(lambdaMin / 20 / unit);
double maxRatio = 1.5;
RectilinearGrid grid = new RectilinearGrid();
grid.Add(dut.BoundingBox.P1);
grid.Add(dut.BoundingBox.P2);
#region openems_workaround
// openEMS v0.0.31 seems to handle transformations on excitation (lumped port),
// SAR and NF2FF simulation components incorrectly.
// Applied workarounds:
// 1. The entire design is moved so that the antenna feedpoint is in the origin
// 2. The SAR and NF2FF boxes are added late, w/o transformations
Vector3D antennaPosition = new Vector3D(
m_antenna.AbsoluteTransformation.X,
m_antenna.AbsoluteTransformation.Y,
m_antenna.AbsoluteTransformation.Z);
solidSpace.Transformations.Add(new TTranslate(-antennaPosition));
grid.Move(-antennaPosition);
grid.Add(new Vector3D(0, 0, 0));
grid.ZLines.Add(-(m_antenna.Parent as CSXCAD.Ara.PCB).Thickness);
grid.Sort();
grid.SmoothMesh(m_dutResolution, maxRatio);
grid.AddAirbox(airBox);
grid.SmoothMesh(maxRes, maxRatio);
simulationSpace.Add(new NF2FFBox("nf2ff",
new Vector3D(grid.XLines.First(), grid.YLines.First(), grid.ZLines.First()),
new Vector3D(grid.XLines.Last(), grid.YLines.Last(), grid.ZLines.Last()),
lambdaMin / 15 / unit));
#endregion
grid.AddPML(8);
Simulation fdtd = new Simulation();
fdtd.Excitation = new GaussExcitation(m_f0, m_fc);
// Export
XDocument doc = new XDocument(
new XDeclaration("1.0", "utf-8", "yes"),
new XComment("CyPhy generated openEMS simulation file"),
new XElement("openEMS",
fdtd.ToXElement(),
new XElement("ContinuousStructure",
new XAttribute("CoordSystem", 0),
simulationSpace.ToXElement(),
grid.ToXElement()
)
)
);
if (dut is CSXCAD.Ara.Module)
{
dut.Parent = m_endo;
}
string openEmsInput = Path.Combine(mainParameters.OutputDirectory, "openEMS_input.xml");
doc.Save(openEmsInput);
string nf2ffInput = Path.Combine(mainParameters.OutputDirectory, "nf2ff_input.xml");
var nf2ff = new Postprocess.NF2FF(m_f0);
nf2ff.ToXDocument().Save(nf2ffInput);
}
public void GenerateSarSimulationInput(string outputDirectory)
{
Compound simulationSpace = new Compound("space");
Compound solidSpace = new Compound("solid-space");
simulationSpace.Add(solidSpace);
solidSpace.Add(endo);
var headPhantom = new CSXCAD.Ara.HeadPhantom();
headPhantom.Transformations.Add(new TRotateX(Math.PI / 2));
headPhantom.Transformations.Add(new TTranslate(32.0, 80.0, -headPhantom.Width / 2 - 7.0)); // TODO: Make endo width/height accessibles
solidSpace.Add(headPhantom);
double airBox = 40;
double envResolution = Math.Round(lambdaMin / 20 / unit);
double maxRatio = 1.5;
RectilinearGrid grid = new BoundingGrid_6x3();
Vector3D dutPosition = new Vector3D(
antenna.AbsoluteTransformation.X,
antenna.AbsoluteTransformation.Y,
antenna.AbsoluteTransformation.Z);
solidSpace.Transformations.Add(new TTranslate(-dutPosition));
grid.Move(-dutPosition);
grid.Add(new Vector3D(0, 0, 0));
grid.ZLines.Add(-(antenna.Parent as CSXCAD.Ara.PCB).Thickness);
grid.Sort();
grid.SmoothMesh(dutResolution, maxRatio);
grid.Add(headPhantom.BoundingBox.P1);
grid.Add(headPhantom.BoundingBox.P2);
grid.SmoothMesh(sarResolution, maxRatio);
grid.AddAirbox(airBox);
grid.SmoothMesh(envResolution, maxRatio);
simulationSpace.Add(new SARBox("SAR", frequency,
new Vector3D(headPhantom.XGridPoints.First(), headPhantom.YGridPoints.First(), headPhantom.ZGridPoints.First()),
new Vector3D(headPhantom.XGridPoints.Last(), headPhantom.YGridPoints.Last(), headPhantom.ZGridPoints.Last())));
simulationSpace.Add(new NF2FFBox("nf2ff",
new Vector3D(grid.XLines.First(), grid.YLines.First(), grid.ZLines.First()),
new Vector3D(grid.XLines.Last(), grid.YLines.Last(), grid.ZLines.Last()),
lambdaMin / 15 / unit));
grid.AddPML(8);
Simulation fdtd = new Simulation();
fdtd.Excitation = new GaussExcitation(frequency, bandwidth);
// Export
XDocument doc = new XDocument(
new XDeclaration("1.0", "utf-8", "yes"),
new XComment("CyPhy generated openEMS simulation file"),
new XElement("openEMS",
fdtd.ToXElement(),
new XElement("ContinuousStructure",
new XAttribute("CoordSystem", 0),
simulationSpace.ToXElement(),
grid.ToXElement()
)
)
);
System.IO.Directory.CreateDirectory(Path.Combine(outputDirectory));
string openEmsInput = Path.Combine(outputDirectory, "openEMS_input.xml");
doc.Save(openEmsInput);
string nf2ffInput = Path.Combine(outputDirectory, "nf2ff_input.xml");
var nf2ff = new Postprocess.NF2FF(frequency);
nf2ff.ToXDocument().Save(nf2ffInput);
File.WriteAllText(Path.Combine(outputDirectory, "run_sar.cmd"), AraRFAnalysis.Properties.Resources.run_sar);
}
private void GenerateDirectivitySimulationInput()
{
// Constants
double unit = 1e-3;
double c0 = 299792458.0;
double lambda0 = c0 / m_f0;
double lambdaMin = c0 / (m_f0 + m_fc);
Compound simulationSpace = new Compound("space");
Compound solidSpace = new Compound("solid-space");
simulationSpace.Add(solidSpace);
Compound dut;
if (m_excludeEndo == true)
{
dut = m_endo.GetModule(m_slotIndex);
}
else
{
dut = m_endo;
}
solidSpace.Add(dut); // modifies dut parent (!)
// Set up simulation grid, nf2ff and SAR
Logger.WriteInfo("Constructing FDTD simulation grid...");
double airBox = 40;
double maxRes = Math.Round(lambdaMin / 20 / unit);
double maxRatio = 1.5;
RectilinearGrid grid = new RectilinearGrid();
grid.Add(dut.BoundingBox.P1);
grid.Add(dut.BoundingBox.P2);
#region openems_workaround
// openEMS v0.0.31 seems to handle transformations on excitation (lumped port),
// SAR and NF2FF simulation components incorrectly.
// Applied workarounds:
// 1. The entire design is moved so that the antenna feedpoint is in the origin
// 2. The SAR and NF2FF boxes are added late, w/o transformations
Vector3D antennaPosition = new Vector3D(
m_antenna.AbsoluteTransformation.X,
m_antenna.AbsoluteTransformation.Y,
m_antenna.AbsoluteTransformation.Z);
solidSpace.Transformations.Add(new TTranslate(-antennaPosition));
grid.Move(-antennaPosition);
grid.Add(new Vector3D(0, 0, 0));
grid.ZLines.Add(-(m_antenna.Parent as CSXCAD.Ara.PCB).Thickness);
grid.Sort();
grid.SmoothMesh(m_dutResolution, maxRatio);
grid.AddAirbox(airBox);
grid.SmoothMesh(maxRes, maxRatio);
simulationSpace.Add(new NF2FFBox("nf2ff",
new Vector3D(grid.XLines.First(), grid.YLines.First(), grid.ZLines.First()),
new Vector3D(grid.XLines.Last(), grid.YLines.Last(), grid.ZLines.Last()),
lambdaMin / 15 / unit));
#endregion
grid.AddPML(8);
Simulation fdtd = new Simulation();
fdtd.Excitation = new GaussExcitation(m_f0, m_fc);
// Export
XDocument doc = new XDocument(
new XDeclaration("1.0", "utf-8", "yes"),
new XComment("CyPhy generated openEMS simulation file"),
new XElement("openEMS",
fdtd.ToXElement(),
new XElement("ContinuousStructure",
new XAttribute("CoordSystem", 0),
simulationSpace.ToXElement(),
grid.ToXElement()
)
)
);
if (dut is CSXCAD.Ara.Module)
{
dut.Parent = m_endo;
}
string openEmsInput = Path.Combine(mainParameters.OutputDirectory, "openEMS_input.xml");
doc.Save(openEmsInput);
string nf2ffInput = Path.Combine(mainParameters.OutputDirectory, "nf2ff_input.xml");
var nf2ff = new Postprocess.NF2FF(m_f0);
nf2ff.ToXDocument().Save(nf2ffInput);
}
public void GenerateFarFieldSimulationInput(string outputDirectory)
{
Compound simulationSpace = new Compound("space");
Compound solidSpace = new Compound("solid-space");
simulationSpace.Add(solidSpace);
Compound dut;
if (excludeEndo == true)
{
dut = endo.GetModule(slotIndex);
}
else
{
dut = endo;
}
solidSpace.Add(dut); // modifies dut parent (!)
double airBox = 40;
double maxRes = Math.Round(lambdaMin / 20 / unit);
double maxRatio = 1.5;
RectilinearGrid grid = new RectilinearGrid();
grid.Add(dut.BoundingBox.P1);
grid.Add(dut.BoundingBox.P2);
Vector3D antennaPosition = new Vector3D(
antenna.AbsoluteTransformation.X,
antenna.AbsoluteTransformation.Y,
antenna.AbsoluteTransformation.Z);
solidSpace.Transformations.Add(new TTranslate(-antennaPosition));
grid.Move(-antennaPosition);
grid.Add(new Vector3D(0, 0, 0));
grid.ZLines.Add(-(antenna.Parent as CSXCAD.Ara.PCB).Thickness);
grid.Sort();
grid.SmoothMesh(dutResolution, maxRatio);
grid.AddAirbox(airBox);
grid.SmoothMesh(maxRes, maxRatio);
simulationSpace.Add(new NF2FFBox("nf2ff",
new Vector3D(grid.XLines.First(), grid.YLines.First(), grid.ZLines.First()),
new Vector3D(grid.XLines.Last(), grid.YLines.Last(), grid.ZLines.Last()),
lambdaMin / 15 / unit));
grid.AddPML(8);
Simulation fdtd = new Simulation();
fdtd.Excitation = new GaussExcitation(frequency, bandwidth);
// Export
XDocument doc = new XDocument(
new XDeclaration("1.0", "utf-8", "yes"),
new XComment("CyPhy generated openEMS simulation file"),
new XElement("openEMS",
fdtd.ToXElement(),
new XElement("ContinuousStructure",
new XAttribute("CoordSystem", 0),
simulationSpace.ToXElement(),
grid.ToXElement()
)
)
);
if (dut is CSXCAD.Ara.Module)
{
dut.Parent = endo;
}
System.IO.Directory.CreateDirectory(outputDirectory);
string openEmsInput = Path.Combine(outputDirectory, "openEMS_input.xml");
doc.Save(openEmsInput);
string nf2ffInput = Path.Combine(outputDirectory, "nf2ff_input.xml");
var nf2ff = new Postprocess.NF2FF(frequency);
nf2ff.ToXDocument().Save(nf2ffInput);
File.WriteAllText(Path.Combine(outputDirectory, "run_farfield.cmd"), AraRFAnalysis.Properties.Resources.run_farfield);
}
private void GenerateSarSimulationInput()
{
// Constants
double unit = 1e-3;
double c0 = 299792458.0;
double lambda0 = c0 / m_f0;
double f_c = 500e6;
double lambdaMin = c0 / (m_f0 + f_c);
Compound simulationSpace = new Compound("space");
Compound solidSpace = new Compound("solid-space");
simulationSpace.Add(solidSpace);
solidSpace.Add(m_endo);
var headPhantom = new CSXCAD.Ara.HeadPhantom();
headPhantom.Transformations.Add(new TRotateX(Math.PI / 2));
headPhantom.Transformations.Add(new TTranslate(32.0, 80.0, -headPhantom.Width / 2 - 7.0)); // TODO: Make endo width/height accessibles
solidSpace.Add(headPhantom);
// Set up simulation grid, nf2ff and SAR
Logger.WriteInfo("Constructing FDTD simulation grid...");
double airBox = 40;
double envResolution = Math.Round(lambdaMin / 20 / unit);
double maxRatio = 1.5;
RectilinearGrid grid = new BoundingGrid_6x3();
#region openems_workaround
// openEMS v0.0.31 seems to handle transformations on excitation (lumped port),
// SAR and NF2FF simulation components incorrectly.
// Applied workarounds:
// 1. The entire design is moved so that the antenna feedpoint is in the origin
// 2. The SAR and NF2FF boxes are added late, w/o transformations
Vector3D dutPosition = new Vector3D(
m_antenna.AbsoluteTransformation.X,
m_antenna.AbsoluteTransformation.Y,
m_antenna.AbsoluteTransformation.Z);
solidSpace.Transformations.Add(new TTranslate(-dutPosition));
grid.Move(-dutPosition);
grid.Add(new Vector3D(0, 0, 0));
grid.ZLines.Add(-(m_antenna.Parent as CSXCAD.Ara.PCB).Thickness);
grid.Sort();
grid.SmoothMesh(m_dutResolution, maxRatio);
grid.Add(headPhantom.BoundingBox.P1);
grid.Add(headPhantom.BoundingBox.P2);
grid.SmoothMesh(m_sarResolution, maxRatio);
grid.AddAirbox(airBox);
grid.SmoothMesh(envResolution, maxRatio);
simulationSpace.Add(new SARBox("SAR", m_f0,
new Vector3D(headPhantom.XGridPoints.First(), headPhantom.YGridPoints.First(), headPhantom.ZGridPoints.First()),
new Vector3D(headPhantom.XGridPoints.Last(), headPhantom.YGridPoints.Last(), headPhantom.ZGridPoints.Last())));
simulationSpace.Add(new NF2FFBox("nf2ff",
new Vector3D(grid.XLines.First(), grid.YLines.First(), grid.ZLines.First()),
new Vector3D(grid.XLines.Last(), grid.YLines.Last(), grid.ZLines.Last()),
lambdaMin / 15 / unit));
#endregion
grid.AddPML(8);
Simulation fdtd = new Simulation();
fdtd.Excitation = new GaussExcitation(m_f0, m_fc);
// Export
XDocument doc = new XDocument(
new XDeclaration("1.0", "utf-8", "yes"),
new XComment("CyPhy generated openEMS simulation file"),
new XElement("openEMS",
fdtd.ToXElement(),
new XElement("ContinuousStructure",
new XAttribute("CoordSystem", 0),
simulationSpace.ToXElement(),
grid.ToXElement()
)
)
);
string openEmsInput = Path.Combine(mainParameters.OutputDirectory, "openEMS_input.xml");
doc.Save(openEmsInput);
string nf2ffInput = Path.Combine(mainParameters.OutputDirectory, "nf2ff_input.xml");
var nf2ff = new Postprocess.NF2FF(m_f0);
nf2ff.ToXDocument().Save(nf2ffInput);
}
private XDocument BuildDipoleSarXml()
{
double unit = 1e-3;
double f0 = 1e9;
double c0 = 299792458.0;
double lambda0 = c0 / f0;
double fStop = 1.5e9;
double lambdaMin = c0 / fStop;
// Simulation engine
Simulation fdtd = new Simulation();
fdtd.Excitation = new GaussExcitation(0, fStop); // possible typo in Dipole_SAR.xml
// Simulation space
Compound s = new Compound("space");
// Dipole antenna
double dipoleLength = 0.46 * lambda0 / unit;
s.Add(new Box(null, new Metal("Dipole"), 1,
new Vector3D(0, 0, -dipoleLength / 2), new Vector3D(0, 0, dipoleLength / 2)));
// Phantom
Compound headPhantom = new Compound("head-phantom");
Dielectric skinMaterial = new Dielectric("skin", 50, kappa: 0.65, density: 1100);
skinMaterial.FillColor = new Material.Color(245, 215, 205, 250);
skinMaterial.EdgeColor = new Material.Color(255, 235, 217, 250);
Sphere skin = new Sphere(null, skinMaterial, 11, new Vector3D(), 1);
skin.Transformations.Add(new TScale(80, 100, 100));
headPhantom.Add(skin);
Dielectric boneMaterial = new Dielectric("headbone", 13, kappa: 0.1, density: 2000);
boneMaterial.FillColor = new Material.Color(227, 227, 227, 250);
boneMaterial.EdgeColor = new Material.Color(202, 202, 202, 250);
Sphere bone = new Sphere(null, boneMaterial, 12, new Vector3D(), 1);
bone.Transformations.Add(new TScale(75, 95, 95));
headPhantom.Add(bone);
Dielectric brainMaterial = new Dielectric("brain", 60, kappa: 0.7, density: 1040);
brainMaterial.FillColor = new Material.Color(255, 85, 127, 250);
brainMaterial.EdgeColor = new Material.Color(71, 222, 179, 250);
Sphere brain = new Sphere(null, brainMaterial, 13, new Vector3D(), 1);
brain.Transformations.Add(new TScale(65, 85, 85));
headPhantom.Add(brain);
headPhantom.Transformations.Add(new TTranslate(100, 0, 0));
s.Add(headPhantom);
// Excitation
double meshResAir = lambdaMin / 20 / unit;
double meshResPhantom = 2.5;
LumpedPort lp = new LumpedPort(100, 1, 50.0,
new Vector3D(-0.1, -0.1, -meshResPhantom / 2),
new Vector3D(+0.1, +0.1, +meshResPhantom / 2), ENormDir.Z, true);
s.Add(lp);
// Grid
RectilinearGrid g = new RectilinearGrid();
g.XLines.Add(0);
g.YLines.Add(0);
foreach (double z in new double[] { -1.0 / 3, 2.0 / 3 })
{
g.ZLines.Add(-dipoleLength / 2 - meshResPhantom * z);
g.ZLines.Add(+dipoleLength / 2 + meshResPhantom * z);
}
foreach (Sphere sp in new Sphere[] { skin, bone, brain })
{
g.XLines.Add(sp.AbsoluteTransformation.Matrix[0, 3] + sp.AbsoluteTransformation.Matrix[0, 0]);
g.XLines.Add(sp.AbsoluteTransformation.Matrix[0, 3] - sp.AbsoluteTransformation.Matrix[0, 0]);
g.YLines.Add(sp.AbsoluteTransformation.Matrix[1, 3] + sp.AbsoluteTransformation.Matrix[1, 1]);
g.YLines.Add(sp.AbsoluteTransformation.Matrix[1, 3] - sp.AbsoluteTransformation.Matrix[1, 1]);
g.ZLines.Add(sp.AbsoluteTransformation.Matrix[2, 3] + sp.AbsoluteTransformation.Matrix[2, 2]);
g.ZLines.Add(sp.AbsoluteTransformation.Matrix[2, 3] - sp.AbsoluteTransformation.Matrix[2, 2]);
}
g.ZLines.Add(-meshResPhantom / 2); // port
g.ZLines.Add(+meshResPhantom / 2);
// Mesh over dipole and phantom
g.SmoothMesh(meshResPhantom);
g.XLines.Add(-200);
g.XLines.Add(250 + 100);
g.YLines.Add(-250);
g.YLines.Add(+250);
g.ZLines.Add(-250);
g.ZLines.Add(+250);
g.SmoothMesh(meshResAir, 1.2);
s.Add(new SARBox("SAR", f0, new Vector3D(-10, -100, -100), new Vector3D(180, 100, 100)));
s.Add(new NF2FFBox("nf2ff",
new Vector3D(g.XLines.First(), g.YLines.First(), g.ZLines.First()),
new Vector3D(g.XLines.Last(), g.YLines.Last(), g.ZLines.Last()),
lambdaMin / 15 / unit));
g.AddPML(10);
g.XLines.Sort();
g.YLines.Sort();
g.ZLines.Sort();
// Export
return new XDocument(
new XDeclaration("1.0", "utf-8", "yes"),
new XComment("Test XML file for CyPhy generated openEMS simulations"),
new XElement("openEMS",
fdtd.ToXElement(),
new XElement("ContinuousStructure",
new XAttribute("CoordSystem", 0),
s.ToXElement(),
g.ToXElement()
)
)
);
}
/// <summary>
/// The orientation of the non-tranformed LumpedPort and the normal
/// direction of its excitation vector should match.
/// </summary>
//[Fact(Skip="Disable output while developing other test cases")]
public void LumpedPort_WithoutTransformation_NormalDirectionCorrect()
{
Compound excitation = new Compound("Excitation");
LumpedPort lumpedPort = new LumpedPort(0, 1, 50, new Vector3D(), new Vector3D(1, 1, 1), ENormDir.X);
excitation.Add(lumpedPort);
Assert.True(false, "Test not implemented yet");
}
private void VisitPorts(CyPhyInterfaces.RFPort currentPort, CyPhyInterfaces.RFPort prevPort)
{
if (m_rfModelFound)
{
return;
}
if (CodeGenerator.verbose) Logger.WriteInfo("Current port: " + currentPort.Name
+ " (" + currentPort.ID + ") parent: " + currentPort.ParentContainer.Name);
if (currentPort.ParentContainer.Kind == "RFModel")
{
m_rfModelFound = true;
// Add excitation
CyPhyInterfaces.RFModel rfModel = CyPhyClasses.RFModel.Cast(currentPort.ParentContainer.Impl);
CSXCAD.Ara.Module m = m_endo.GetModule(m_slotIndex);
CSXCAD.Compound excitation = new Compound(null, "Excitation",
new Vector3D(rfModel.Attributes.X, rfModel.Attributes.Y, m.PCB.Thickness),
(double)rfModel.Attributes.Rotation * Math.PI / 2);
excitation.Add(new LumpedPort(100, 1, 50.0,
new Vector3D(0, 0, -m.PCB.Thickness),
new Vector3D(0, 0, 0),
ENormDir.Z, true));
m.PCB.Add(excitation);
return;
}
var portQuery = (prevPort == null) ?
(from p in currentPort.SrcConnections.PortCompositionCollection
select p.SrcEnd).Union(
from p in currentPort.DstConnections.PortCompositionCollection
select p.DstEnd) :
(from p in currentPort.SrcConnections.PortCompositionCollection
where p.SrcEnd.ID != prevPort.ID
select p.SrcEnd).Union(
from p in currentPort.DstConnections.PortCompositionCollection
where p.DstEnd.ID != prevPort.ID
select p.DstEnd);
foreach (CyPhyClasses.RFPort nextPort in portQuery)
{
VisitPorts(nextPort, currentPort);
}
}
static void TestAraPhone()
{
Endo e = new Endo(null, "endo", new Vector3D(0, 0, 0), 0);
Module_1x2 m1 = new Module_1x2("m1");
Module_2x2 m2 = new Module_2x2("m2");
Module_1x2 m4 = new Module_1x2("m4");
Module_2x2 m5 = new Module_2x2("m5");
Module_1x2 m6 = new Module_1x2("m6");
Module_1x2 m7 = new Module_1x2("m7");
XmlCompound u1 = new XmlCompound(m1, "u1", new Vector3D(0, 0, 0), 0);
u1.Parse(XElement.Load("Box.xml"));
u1.Transformations.Add(new TTranslate(20, 3, 3));
m5.Add(u1);
//e.AddModule(1, m1);
//e.AddModule(3, m2);
//e.AddModule(4, m4);
e.AddModule(5, m5);
//e.AddModule(6, m6);
//e.AddModule(7, m7);
// Phantom
Compound headPhantom = new Compound("head-phantom");
Dielectric skinMaterial = new Dielectric("skin", 50, kappa: 0.65, density: 1100);
skinMaterial.FillColor = new Material.Color(245, 215, 205, 54);
skinMaterial.EdgeColor = new Material.Color(255, 235, 217, 250);
Sphere skin = new Sphere(null, skinMaterial, 11, new Vector3D(), 1);
skin.Transformations.Add(new TScale(80, 100, 80));
headPhantom.Add(skin);
Dielectric boneMaterial = new Dielectric("bone", 13, kappa: 0.1, density: 2000);
boneMaterial.FillColor = new Material.Color(227, 227, 227, 54);
boneMaterial.EdgeColor = new Material.Color(202, 202, 202, 250);
Sphere bone = new Sphere(null, boneMaterial, 12, new Vector3D(), 1);
bone.Transformations.Add(new TScale(75, 95, 75));
headPhantom.Add(bone);
Dielectric brainMaterial = new Dielectric("brain", 60, kappa: 0.7, density: 1040);
brainMaterial.FillColor = new Material.Color(255, 85, 127, 54);
brainMaterial.EdgeColor = new Material.Color(71, 222, 179, 250);
Sphere brain = new Sphere(null, brainMaterial, 13, new Vector3D(), 1);
brain.Transformations.Add(new TScale(65, 85, 65));
headPhantom.Add(brain);
headPhantom.Transformations.Add(new TTranslate(33, 70, 90));
Compound s = new Compound("space");
s.Add(e);
s.Add(headPhantom);
RectilinearGrid g = new SimpleGrid_6x3();
g.ZLines.Add(170);
double airBox = 50;
double maxRes = 5;
double ratio = 1.5;
g.AddAirbox(airBox);
g.SmoothMesh(maxRes, ratio);
s.Add(new SARBox("SAR", 1200e6, new Vector3D(), new Vector3D(20, 20, 20)));
s.Add(new NF2FFBox("nf2ff",
new Vector3D(g.XLines.First(), g.YLines.First(), g.ZLines.First()),
new Vector3D(g.XLines.Last(), g.YLines.Last(), g.ZLines.Last())));
s.Add(new LumpedPort(100, 1, 50.0,
new Vector3D(-0.1, -0.1, -1.25),
new Vector3D(+0.1, +0.1, +1.25), ENormDir.Z, true));
Simulation fdtd = new Simulation();
fdtd.Excitation = new GaussExcitation(1e9, 1.5e9);
g.AddPML(10);
XDocument doc = new XDocument(
new XDeclaration("1.0", "utf-8", "yes"),
new XComment("Test XML file for CyPhy generated openEMS simulations"),
new XElement("openEMS",
fdtd.ToXElement(),
new XElement("ContinuousStructure",
new XAttribute("CoordSystem", 0),
s.ToXElement(),
g.ToXElement()
)
)
);
doc.Save("CSXTest.xml");
}
public void Initialize()
{
// Ara Endo
endo = new CSXCAD.Ara.Endo();
CSXCAD.Ara.Module araModule = null;
switch (moduleSize)
{
case "1x2":
araModule = new CSXCAD.Ara.Module_1x2("dut-module");
break;
case "2x2":
araModule = new CSXCAD.Ara.Module_2x2("dut-module");
break;
default:
break;
}
endo.AddModule(slotIndex, araModule);
antenna = new CSXCAD.XmlCompound(null, "dut-antenna", new Vector3D(x, y, thickness), rot);
antenna.Parse(XElement.Load(inputFile));
araModule.PCB.Add(antenna);
// Excitation
CSXCAD.Compound excitation = new Compound(null, "Excitation", new Vector3D(x, y, thickness), rot);
excitation.Add(new LumpedPort(100,
1,
impedance,
new Vector3D(0, 0, -araModule.PCB.Thickness),
new Vector3D(0, 0, 0),
ENormDir.Z,
true));
araModule.PCB.Add(excitation);
}