public void CompartmentElement(Hashtable attrs)
{
Compartment compartment = new Compartment(this.model, attrs);
CompartmentType compartmentType = null;
int spatialDimensions = 3;
double size = 1;
String units = null; // unit enum or user-defined unit
Compartment outside = null;
Boolean constant = true;
if (attrs.Contains("constant"))
constant = Boolean.Parse((String)attrs["units"]);
if (attrs.Contains("spatialdimensions"))
spatialDimensions = (int)(Int32.Parse((String)attrs["spatialdimensions"]));
if (attrs.Contains("size"))
size = (double)(Double.Parse((String)attrs["size"]));
else if (attrs.Contains("volume")) // from SBML Level 1
size = (double)(Double.Parse((String)attrs["volume"]));
if (attrs.Contains("units") && this.model.IsUnits((String)attrs["units"]))
units = (String)attrs["units"];
else
{
switch (spatialDimensions)
{
case 1:
units = "length";
break;
case 2:
units = "area";
break;
case 3:
units = "volume";
break;
}
}
if (attrs.Contains("compartmenttype"))
{
String cTypeId = (String)attrs["compartmenttype"];
compartmentType = (CompartmentType)this.model.findObject(cTypeId);
}
if (attrs.Contains("outside"))
{
String cId = (String)attrs["outside"];
outside = (Compartment)this.model.findObject(cId);
}
compartment.AddProperties(compartmentType, spatialDimensions, size,
units, outside, constant);
this.model.listOfCompartments.Add(compartment);
}
