public void runInitiation_Bruker9T_test1() { var run = new BrukerV3Run(FileRefs.RawDataMSFiles.Bruker9TStandardFile1); Assert.AreEqual(0, run.MinLCScan); Assert.AreEqual(599, run.MaxLCScan); Assert.AreEqual("SWT_9t_TestDS216_Small", run.DatasetName); Assert.AreEqual(FileRefs.RawDataMSFiles.Bruker9TStandardFile1, run.DataSetPath); }
public void runInitiation_Bruker9T_test2() { var run = new BrukerV3Run(FileRefs.RawDataMSFiles.Bruker9TStandardFile2); Assert.AreEqual(0, run.MinLCScan); Assert.AreEqual(4274, run.MaxLCScan); Assert.AreEqual("RSPH_Aonly_01_run1_11Oct07_Andromeda_07-09-02", run.DatasetName); Assert.AreEqual(FileRefs.RawDataMSFiles.Bruker9TStandardFile2, run.DataSetPath); }
public void runInitiation_Bruker15T_Test1() { var run = new BrukerV3Run(FileRefs.RawDataMSFiles.Bruker15TFile1); Assert.AreEqual(0, run.MinLCScan); Assert.AreEqual(17, run.MaxLCScan); Assert.AreEqual(18, run.GetNumMSScans()); Assert.AreEqual("092410_ubiquitin_AutoCID_000004", run.DatasetName); Assert.AreEqual(FileRefs.RawDataMSFiles.Bruker15TFile1, run.DataSetPath); }
public void runInitiation_Bruker12T_dotD_Test1() { var run = new BrukerV3Run(FileRefs.RawDataMSFiles.BrukerSolarix12T_dotD_File1); Assert.AreEqual(0, run.MinLCScan); Assert.AreEqual(0, run.MaxLCScan); Assert.AreEqual(1, run.GetNumMSScans()); Assert.AreEqual("BSA_10082010_000003", run.DatasetName); Assert.AreEqual(FileRefs.RawDataMSFiles.BrukerSolarix12T_dotD_File1, run.DataSetPath); }
public void GetSpectrum_Bruker9T_Test1() { var run = new BrukerV3Run(FileRefs.RawDataMSFiles.Bruker9TStandardFile1); var xydata = new XYData(); var scanSet = new ScanSet(300); xydata = run.GetMassSpectrum(scanSet); Assert.That(xydata.Xvalues != null); Assert.That(xydata.Xvalues.Length > 0); Assert.AreEqual(98897, xydata.Xvalues.Length); }
public void GetSpectrum_Bruker12T_ser_Test1() { var run = new BrukerV3Run(FileRefs.RawDataMSFiles.BrukerSolarix12TFile1); var xydata = new XYData(); var scanSet = new ScanSet(2); xydata = run.GetMassSpectrum(scanSet); Assert.That(xydata.Xvalues != null); Assert.That(xydata.Xvalues.Length > 0); Assert.AreEqual(204162, xydata.Xvalues.Length); }
public void thisTestFailed_unauthorizedAccessError() { string testFile = @"\\proto-3\15T_DMS1\CCR5_DEGLY_1_3_01_635"; BrukerV3Run run = new BrukerV3Run(testFile); ScanSet scanSet = new ScanSet(2); run.GetMassSpectrum(scanSet); Assert.That(run.XYData.Xvalues != null); Assert.That(run.XYData.Xvalues.Length > 0); }
public void accessLocalFile_test1() { string testFile = @"D:\Data\Redmine_issues\Issue0095_15T_FailureToLoadData\CCR5_DEGLY_1_3_01_635"; BrukerV3Run run = new BrukerV3Run(testFile); ScanSet scanSet = new ScanSet(2); run.GetMassSpectrum(scanSet); Assert.That(run.XYData.Xvalues != null); Assert.That(run.XYData.Xvalues.Length > 0); Assert.AreEqual(195733, run.XYData.Xvalues.Length); }
public void GetSpectrum_Bruker15T_ser_Test1() { var run = new BrukerV3Run(FileRefs.RawDataMSFiles.Bruker15TFile1); var xydata = new XYData(); var scanSet = new ScanSet(2); xydata = run.GetMassSpectrum(scanSet); Assert.That(xydata.Xvalues != null); Assert.That(xydata.Xvalues.Length > 0); Assert.AreEqual(209817, xydata.Xvalues.Length); //Assert.AreEqual(28962756691,(long)xydata.Yvalues.Sum()); }
public void GetSpectrum_Bruker12T_fid_Test2() { var run = new BrukerV3Run(FileRefs.RawDataMSFiles.BrukerSolarix12T_FID_File1); var xydata = new XYData(); var scanSet = new ScanSet(0); double minMZ = 700; double maxMZ = 701; xydata = run.GetMassSpectrum(scanSet, minMZ, maxMZ); Assert.That(xydata.Xvalues != null); Assert.That(xydata.Xvalues.Length > 0); Assert.AreEqual(630, xydata.Xvalues.Length); }
public void Get_summed_Spectrum_Bruker9T_Test1() { var run = new BrukerV3Run(FileRefs.RawDataMSFiles.Bruker9TStandardFile2); var xydata = new XYData(); var scanSet = new ScanSet(1000, 999, 1001); xydata = run.GetMassSpectrum(scanSet); Assert.That(xydata.Xvalues != null); Assert.That(xydata.Xvalues.Length > 0); Assert.AreEqual(211064, xydata.Xvalues.Length); }
public void GetSpectrum_Bruker15T_SummedMS_Test1() { var run = new BrukerV3Run(FileRefs.RawDataMSFiles.Bruker15TFile1); var xydata = new XYData(); var scanSet = new ScanSet(2, 1, 3); xydata = run.GetMassSpectrum(scanSet); Assert.That(xydata.Xvalues != null); Assert.That(xydata.Xvalues.Length > 0); Assert.AreEqual(209817, xydata.Xvalues.Length); //TODO: confirm this value: (currently different) //Assert.AreEqual(86318972269, (long)xydata.Yvalues.Sum()); }