public void runInitiation_Bruker9T_test1()
{
var run = new BrukerV3Run(FileRefs.RawDataMSFiles.Bruker9TStandardFile1);
Assert.AreEqual(0, run.MinLCScan);
Assert.AreEqual(599, run.MaxLCScan);
Assert.AreEqual("SWT_9t_TestDS216_Small", run.DatasetName);
Assert.AreEqual(FileRefs.RawDataMSFiles.Bruker9TStandardFile1, run.DataSetPath);
}
public void runInitiation_Bruker9T_test2()
{
var run = new BrukerV3Run(FileRefs.RawDataMSFiles.Bruker9TStandardFile2);
Assert.AreEqual(0, run.MinLCScan);
Assert.AreEqual(4274, run.MaxLCScan);
Assert.AreEqual("RSPH_Aonly_01_run1_11Oct07_Andromeda_07-09-02", run.DatasetName);
Assert.AreEqual(FileRefs.RawDataMSFiles.Bruker9TStandardFile2, run.DataSetPath);
}
public void runInitiation_Bruker15T_Test1()
{
var run = new BrukerV3Run(FileRefs.RawDataMSFiles.Bruker15TFile1);
Assert.AreEqual(0, run.MinLCScan);
Assert.AreEqual(17, run.MaxLCScan);
Assert.AreEqual(18, run.GetNumMSScans());
Assert.AreEqual("092410_ubiquitin_AutoCID_000004", run.DatasetName);
Assert.AreEqual(FileRefs.RawDataMSFiles.Bruker15TFile1, run.DataSetPath);
}
public void runInitiation_Bruker12T_dotD_Test1()
{
var run = new BrukerV3Run(FileRefs.RawDataMSFiles.BrukerSolarix12T_dotD_File1);
Assert.AreEqual(0, run.MinLCScan);
Assert.AreEqual(0, run.MaxLCScan);
Assert.AreEqual(1, run.GetNumMSScans());
Assert.AreEqual("BSA_10082010_000003", run.DatasetName);
Assert.AreEqual(FileRefs.RawDataMSFiles.BrukerSolarix12T_dotD_File1, run.DataSetPath);
}
public void GetSpectrum_Bruker9T_Test1()
{
var run = new BrukerV3Run(FileRefs.RawDataMSFiles.Bruker9TStandardFile1);
var xydata = new XYData();
var scanSet = new ScanSet(300);
xydata = run.GetMassSpectrum(scanSet);
Assert.That(xydata.Xvalues != null);
Assert.That(xydata.Xvalues.Length > 0);
Assert.AreEqual(98897, xydata.Xvalues.Length);
}
public void GetSpectrum_Bruker12T_ser_Test1()
{
var run = new BrukerV3Run(FileRefs.RawDataMSFiles.BrukerSolarix12TFile1);
var xydata = new XYData();
var scanSet = new ScanSet(2);
xydata = run.GetMassSpectrum(scanSet);
Assert.That(xydata.Xvalues != null);
Assert.That(xydata.Xvalues.Length > 0);
Assert.AreEqual(204162, xydata.Xvalues.Length);
}
public void thisTestFailed_unauthorizedAccessError()
{
string testFile = @"\\proto-3\15T_DMS1\CCR5_DEGLY_1_3_01_635";
BrukerV3Run run = new BrukerV3Run(testFile);
ScanSet scanSet = new ScanSet(2);
run.GetMassSpectrum(scanSet);
Assert.That(run.XYData.Xvalues != null);
Assert.That(run.XYData.Xvalues.Length > 0);
}
public void accessLocalFile_test1()
{
string testFile = @"D:\Data\Redmine_issues\Issue0095_15T_FailureToLoadData\CCR5_DEGLY_1_3_01_635";
BrukerV3Run run = new BrukerV3Run(testFile);
ScanSet scanSet = new ScanSet(2);
run.GetMassSpectrum(scanSet);
Assert.That(run.XYData.Xvalues != null);
Assert.That(run.XYData.Xvalues.Length > 0);
Assert.AreEqual(195733, run.XYData.Xvalues.Length);
}
public void GetSpectrum_Bruker15T_ser_Test1()
{
var run = new BrukerV3Run(FileRefs.RawDataMSFiles.Bruker15TFile1);
var xydata = new XYData();
var scanSet = new ScanSet(2);
xydata = run.GetMassSpectrum(scanSet);
Assert.That(xydata.Xvalues != null);
Assert.That(xydata.Xvalues.Length > 0);
Assert.AreEqual(209817, xydata.Xvalues.Length);
//Assert.AreEqual(28962756691,(long)xydata.Yvalues.Sum());
}
public void GetSpectrum_Bruker12T_fid_Test2()
{
var run = new BrukerV3Run(FileRefs.RawDataMSFiles.BrukerSolarix12T_FID_File1);
var xydata = new XYData();
var scanSet = new ScanSet(0);
double minMZ = 700;
double maxMZ = 701;
xydata = run.GetMassSpectrum(scanSet, minMZ, maxMZ);
Assert.That(xydata.Xvalues != null);
Assert.That(xydata.Xvalues.Length > 0);
Assert.AreEqual(630, xydata.Xvalues.Length);
}
public void Get_summed_Spectrum_Bruker9T_Test1()
{
var run = new BrukerV3Run(FileRefs.RawDataMSFiles.Bruker9TStandardFile2);
var xydata = new XYData();
var scanSet = new ScanSet(1000, 999, 1001);
xydata = run.GetMassSpectrum(scanSet);
Assert.That(xydata.Xvalues != null);
Assert.That(xydata.Xvalues.Length > 0);
Assert.AreEqual(211064, xydata.Xvalues.Length);
}
public void GetSpectrum_Bruker15T_SummedMS_Test1()
{
var run = new BrukerV3Run(FileRefs.RawDataMSFiles.Bruker15TFile1);
var xydata = new XYData();
var scanSet = new ScanSet(2, 1, 3);
xydata = run.GetMassSpectrum(scanSet);
Assert.That(xydata.Xvalues != null);
Assert.That(xydata.Xvalues.Length > 0);
Assert.AreEqual(209817, xydata.Xvalues.Length);
//TODO: confirm this value: (currently different)
//Assert.AreEqual(86318972269, (long)xydata.Yvalues.Sum());
}
