public DocumentGridForm(SkylineViewContext viewContext) { InitializeComponent(); _originalFormTitle = Text; BindingListSource.SetViewContext(viewContext); BindingListSource.ListChanged += BindingListSourceOnListChanged; }
public override void ToggleClustering(BindingListSource bindingListSource, bool turnClusteringOn) { if (Equals(ViewGroup.BUILT_IN.Id, bindingListSource.ViewInfo.ViewGroup.Id)) { if (turnClusteringOn && bindingListSource.ViewInfo.ViewSpec.Name == AbstractViewContext.DefaultViewName) { bindingListSource.SetViewContext(this, GetViewInfo(ViewGroup.BUILT_IN.Id.ViewName(FoldChangeBindingSource.CLUSTERED_VIEW_NAME))); return; } if (!turnClusteringOn && bindingListSource.ViewInfo.ViewSpec.Name == FoldChangeBindingSource.CLUSTERED_VIEW_NAME) { bindingListSource.SetViewContext(this, GetViewInfo(ViewGroup.BUILT_IN.Id.ViewName(AbstractViewContext.DefaultViewName))); } } base.ToggleClustering(bindingListSource, turnClusteringOn); }
public bool ChooseView(ViewName viewName) { var viewInfo = BindingListSource.ViewContext.GetViewInfo(viewName); if (null == viewInfo) { return(false); } BindingListSource.SetViewContext(BindingListSource.ViewContext, viewInfo); return(true); }
public DocumentGridForm(SkylineViewContext viewContext) { InitializeComponent(); BindingListSource.QueryLock = viewContext.SkylineDataSchema.QueryLock; _originalFormTitle = Text; BindingListSource.SetViewContext(viewContext); BindingListSource.ListChanged += BindingListSourceOnListChanged; _skylineWindow = viewContext.SkylineDataSchema.SkylineWindow; var documentGridViewContext = viewContext as DocumentGridViewContext; if (documentGridViewContext != null) { documentGridViewContext.BoundDataGridView = DataGridView; } }
public void AddRef() { if (Interlocked.Increment(ref _referenceCount) == 1) { _skylineDataSchema = new SkylineDataSchema(GroupComparisonModel.DocumentContainer, SkylineDataSchema.GetLocalizedSchemaLocalizer()); var viewInfo = new ViewInfo(_skylineDataSchema, typeof(FoldChangeRow), GetDefaultViewSpec(new FoldChangeRow[0])) .ChangeViewGroup(ViewGroup.BUILT_IN); var rowSourceInfo = new RowSourceInfo(typeof(FoldChangeRow), new StaticRowSource(new FoldChangeRow[0]), new[] { viewInfo }); ViewContext = new GroupComparisonViewContext(_skylineDataSchema, new[] { rowSourceInfo }); _container = new Container(); _bindingListSource = new BindingListSource(_container); _bindingListSource.SetViewContext(ViewContext, viewInfo); GroupComparisonModel.ModelChanged += GroupComparisonModelOnModelChanged; GroupComparisonModelOnModelChanged(GroupComparisonModel, new EventArgs()); } }
public bool Export(CancellationToken cancellationToken, IProgressMonitor progressMonitor, ref IProgressStatus status, ViewInfo viewInfo, TextWriter writer, DsvWriter dsvWriter) { progressMonitor = progressMonitor ?? new SilentProgressMonitor(); using (var bindingListSource = new BindingListSource(cancellationToken)) { bindingListSource.SetViewContext(this, viewInfo); progressMonitor.UpdateProgress(status = status.ChangePercentComplete(5) .ChangeMessage(Resources.ExportReportDlg_ExportReport_Writing_report)); WriteDataWithStatus(progressMonitor, ref status, writer, bindingListSource, dsvWriter); if (progressMonitor.IsCanceled) { return(false); } writer.Flush(); progressMonitor.UpdateProgress(status = status.Complete()); } return(true); }
public void TestPivotResultsThenIsotopeLabel() { var assembly = typeof(LiveReportPivotTest).Assembly; XmlSerializer documentSerializer = new XmlSerializer(typeof(SrmDocument)); // ReSharper disable once AssignNullToNotNullAttribute var document = (SrmDocument)documentSerializer.Deserialize( assembly.GetManifestResourceStream(typeof(ReportSpecConverterTest), "silac_1_to_4.sky")); XmlSerializer reportSerializer = new XmlSerializer(typeof(ReportOrViewSpecList)); // ReSharper disable once AssignNullToNotNullAttribute var views = (ReportOrViewSpecList)reportSerializer.Deserialize( assembly.GetManifestResourceStream(typeof(ReportSpecConverterTest), "LiveReportPivots.skyr")); var view = views.First(reportSpec => reportSpec.Name == "ResultSummaryPivotResultsThenLabelType").ViewSpec; var bindingListSource = new BindingListSource(); var documentContainer = new MemoryDocumentContainer(); Assert.IsTrue(documentContainer.SetDocument(document, null)); var dataSchema = new SkylineDataSchema(documentContainer, DataSchemaLocalizer.INVARIANT); bindingListSource.SetViewContext(new DocumentGridViewContext(dataSchema), new ViewInfo(dataSchema, typeof(Precursor), view)); var expectedColumnNames = new[] { "PeptideSequence", "Chromatograms Replicate", "Chromatograms PeptideRetentionTime", "light IsotopeLabelType", "light MeanTotalArea", "light Chromatograms TotalArea", "heavy IsotopeLabelType", "heavy MeanTotalArea", "heavy Chromatograms TotalArea", }; var actualColumnNames = bindingListSource.GetItemProperties(null) .Cast <PropertyDescriptor>() .Select(pd => pd.DisplayName) .ToArray(); CollectionAssert.AreEqual(expectedColumnNames, actualColumnNames); }
public DocumentGridForm(SkylineViewContext viewContext, string text) { InitializeComponent(); if (!string.IsNullOrEmpty(text)) { Text = text; } _originalFormTitle = Text; if (viewContext == null) // For designer { return; } BindingListSource.QueryLock = viewContext.SkylineDataSchema.QueryLock; BindingListSource.SetViewContext(viewContext); BindingListSource.ListChanged += BindingListSourceOnListChanged; _skylineWindow = viewContext.SkylineDataSchema.SkylineWindow; var documentGridViewContext = viewContext as DocumentGridViewContext; if (documentGridViewContext != null) { documentGridViewContext.BoundDataGridView = DataGridView; } }
public void CheckReport(ReportSpec reportSpec) { string message = string.Format("Report {0}", reportSpec.Name); var converter = new ReportSpecConverter(_dataSchema); var viewInfo = converter.Convert(reportSpec); var report = Report.Load(reportSpec); ResultSet resultSet; try { resultSet = report.Execute(_database); } catch (Exception) { return; } using (var bindingListSource = new BindingListSource()) { bindingListSource.SetViewContext(new SkylineViewContext(viewInfo.ParentColumn, GetRowSource(viewInfo)), viewInfo); var oldCaptions = resultSet.ColumnInfos.Select(columnInfo => columnInfo.Caption).ToArray(); var properties = bindingListSource.GetItemProperties(null); IList resultRows = bindingListSource; var newCaptions = properties.Cast <PropertyDescriptor>().Select(pd => pd.DisplayName).ToArray(); if (!oldCaptions.SequenceEqual(newCaptions)) { CollectionAssert.AreEqual(oldCaptions, newCaptions, message); } if (resultSet.RowCount != resultRows.Count) { Assert.AreEqual(resultSet.RowCount, resultRows.Count, message); } resultRows = SortRows(resultRows, properties); resultSet = SortResultSet(resultSet); for (int iRow = 0; iRow < resultSet.RowCount; iRow++) { for (int iCol = 0; iCol < resultSet.ColumnInfos.Count; iCol++) { var propertyDescriptor = properties[iCol]; object oldValue = resultSet.GetRow(iRow)[iCol]; object newValue = propertyDescriptor.GetValue(resultRows[iRow]); if (!Equals(oldValue, newValue)) { Assert.AreEqual(oldValue, newValue, message + "{0}:Values are not equal on Row {1} Column {2} ({3}) FullName:{4}", message, iRow, iCol, propertyDescriptor.DisplayName, propertyDescriptor.Name); } } } foreach (char separator in new[] { ',', '\t' }) { StringWriter oldStringWriter = new StringWriter(); var cultureInfo = LocalizationHelper.CurrentCulture; ResultSet.WriteReportHelper(resultSet, separator, oldStringWriter, cultureInfo); StringWriter newStringWriter = new StringWriter(); var skylineViewContext = (SkylineViewContext)bindingListSource.ViewContext; ProgressStatus progressStatus = new ProgressStatus("Status"); skylineViewContext.Export(null, ref progressStatus, viewInfo, newStringWriter, new DsvWriter(cultureInfo, separator)); var newLineSeparators = new[] { "\r\n" }; var oldLines = oldStringWriter.ToString().Split(newLineSeparators, StringSplitOptions.None); var newLines = newStringWriter.ToString().Split(newLineSeparators, StringSplitOptions.None); // TODO(nicksh): Old reports would hide columns for annotations that were not in the document. bool anyHiddenColumns = resultSet.ColumnInfos.Any(column => column.IsHidden); if (!anyHiddenColumns) { Assert.AreEqual(oldLines[0], newLines[0]); CollectionAssert.AreEquivalent(oldLines, newLines); } } } }
private void UpdateViewContext() { RememberActiveView(); IRowSource rowSource = null; Type rowType = null; string builtInViewName = null; if (_selectedIdentityPaths.Count == 1) { var identityPath = _selectedIdentityPaths[0]; if (identityPath.Length == 2) { rowSource = new PeptideResultList(new Peptide(_dataSchema, identityPath)); rowType = typeof(PeptideResult); builtInViewName = "Peptide Results"; // Not L10N } else if (identityPath.Length == 3) { rowSource = new PrecursorResultList(new Precursor(_dataSchema, identityPath)); rowType = typeof(PrecursorResult); builtInViewName = "Precursor Results"; // Not L10N } else if (identityPath.Length == 4) { rowSource = new TransitionResultList(new Transition(_dataSchema, identityPath)); rowType = typeof(TransitionResult); builtInViewName = "Transition Results"; // Not L10N } } else { // ReSharper disable PossibleMultipleEnumeration var pathLengths = _selectedIdentityPaths.Select(path => path.Length).Distinct().ToArray(); if (pathLengths.Length == 1) { var pathLength = pathLengths[0]; if (pathLength == 3) { rowSource = new MultiPrecursorResultList(_dataSchema, _selectedIdentityPaths.Select(idPath => new Precursor(_dataSchema, idPath))); rowType = typeof(MultiPrecursorResult); builtInViewName = "Multiple Precursor Results"; // Not L10N } if (pathLength == 4) { rowSource = new MultiTransitionResultList(_dataSchema, _selectedIdentityPaths.Select(idPath => new Transition(_dataSchema, idPath))); rowType = typeof(MultiTransitionResult); builtInViewName = "Multiple Transition Results"; // Not L10N } } // ReSharper restore PossibleMultipleEnumeration } if (rowSource == null) { rowSource = new ReplicateList(_dataSchema); rowType = typeof(Replicate); builtInViewName = "Replicates"; // Not L10N } var parentColumn = ColumnDescriptor.RootColumn(_dataSchema, rowType); var builtInViewSpec = SkylineViewContext.GetDefaultViewInfo(parentColumn).GetViewSpec() .SetName(builtInViewName).SetRowType(rowType); if (null == BindingListSource.ViewContext || !BindingListSource.ViewContext.GetViewSpecList(ViewGroup.BUILT_IN.Id).ViewSpecs.Contains(builtInViewSpec)) { var oldViewContext = BindingListSource.ViewContext as ResultsGridViewContext; if (null != oldViewContext) { oldViewContext.RememberColumnWidths(DataGridView); } Debug.Assert(null != builtInViewName); var builtInView = new ViewInfo(parentColumn, builtInViewSpec).ChangeViewGroup(ViewGroup.BUILT_IN); var rowSourceInfo = new RowSourceInfo(rowSource, builtInView); var viewContext = new ResultsGridViewContext(_dataSchema, new[] { rowSourceInfo }); ViewInfo activeView = null; string activeViewName; if (Settings.Default.ResultsGridActiveViews.TryGetValue(rowSourceInfo.Name, out activeViewName)) { activeView = viewContext.GetViewInfo(ViewName.Parse(activeViewName)); } activeView = activeView ?? builtInView; BindingListSource.SetViewContext(viewContext, activeView); } BindingListSource.RowSource = rowSource; }
public void TestMapping() { var settings = SrmSettingsList.GetDefault(); var document = new SrmDocument(settings); var documentContainer = new MemoryDocumentContainer(); documentContainer.SetDocument(document, null); using (var database = new Database(settings)) { var dataSchema = new SkylineDataSchema(documentContainer, DataSchemaLocalizer.INVARIANT); var sessionFactory = database.SessionFactory; foreach (var classMetaData in sessionFactory.GetAllClassMetadata().Values) { var tableType = classMetaData.GetMappedClass(EntityMode.Poco); foreach (var propertyName in classMetaData.PropertyNames) { if (propertyName == "Protein" && tableType == typeof(DbProteinResult)) { continue; } var queryDef = new QueryDef { Select = new[] { new ReportColumn(tableType, propertyName), } }; var reportSpec = new ReportSpec("test", queryDef); var newTableType = ReportSpecConverter.GetNewTableType(reportSpec); Assert.IsNotNull(newTableType, "No table for type {0}", tableType); var converter = new ReportSpecConverter(dataSchema); var viewInfo = converter.Convert(reportSpec); Assert.IsNotNull(viewInfo, "Unable to convert property {0} in table {1}", propertyName, tableType); Assert.AreEqual(1, viewInfo.DisplayColumns.Count, "No conversion for property {0} in table {1}", propertyName, tableType); Assert.IsNotNull(viewInfo.DisplayColumns[0].ColumnDescriptor, "Column not found for property {0} in table {1}", propertyName, tableType); var report = Report.Load(reportSpec); var resultSet = report.Execute(database); var bindingListSource = new BindingListSource(); bindingListSource.SetViewContext(new SkylineViewContext(viewInfo.ParentColumn, Array.CreateInstance(viewInfo.ParentColumn.PropertyType, 0)), viewInfo); var properties = bindingListSource.GetItemProperties(null); var oldCaptions = resultSet.ColumnInfos.Select(columnInfo => columnInfo.Caption).ToArray(); var newCaptions = properties.Cast <PropertyDescriptor>().Select(pd => pd.DisplayName).ToArray(); if (oldCaptions.Length != newCaptions.Length) { Console.Out.WriteLine(oldCaptions); } CollectionAssert.AreEqual(oldCaptions, newCaptions, "Caption mismatch on {0} in {1}", propertyName, tableType); for (int i = 0; i < resultSet.ColumnInfos.Count; i++) { var columnInfo = resultSet.ColumnInfos[i]; var formatAttribute = (FormatAttribute)properties[i].Attributes[typeof(FormatAttribute)]; string message = string.Format("Format problem on column converted from {0} in {1}", columnInfo.ReportColumn.Column, columnInfo.ReportColumn.Table); if (null == columnInfo.Format) { Assert.IsTrue(null == formatAttribute || null == formatAttribute.Format, message); } else { Assert.IsNotNull(formatAttribute, message); Assert.AreEqual(columnInfo.Format, formatAttribute.Format, message); } if (columnInfo.IsNumeric) { Assert.IsNotNull(formatAttribute, message); Assert.AreEqual(TextUtil.EXCEL_NA, formatAttribute.NullValue, message); } else { Assert.IsTrue(null == formatAttribute || null == formatAttribute.NullValue, message); } } } } } }