public DocumentGridForm(SkylineViewContext viewContext)
{
InitializeComponent();
_originalFormTitle = Text;
BindingListSource.SetViewContext(viewContext);
BindingListSource.ListChanged += BindingListSourceOnListChanged;
}
public override void ToggleClustering(BindingListSource bindingListSource, bool turnClusteringOn)
{
if (Equals(ViewGroup.BUILT_IN.Id, bindingListSource.ViewInfo.ViewGroup.Id))
{
if (turnClusteringOn && bindingListSource.ViewInfo.ViewSpec.Name == AbstractViewContext.DefaultViewName)
{
bindingListSource.SetViewContext(this, GetViewInfo(ViewGroup.BUILT_IN.Id.ViewName(FoldChangeBindingSource.CLUSTERED_VIEW_NAME)));
return;
}
if (!turnClusteringOn && bindingListSource.ViewInfo.ViewSpec.Name ==
FoldChangeBindingSource.CLUSTERED_VIEW_NAME)
{
bindingListSource.SetViewContext(this, GetViewInfo(ViewGroup.BUILT_IN.Id.ViewName(AbstractViewContext.DefaultViewName)));
}
}
base.ToggleClustering(bindingListSource, turnClusteringOn);
}
public bool ChooseView(ViewName viewName)
{
var viewInfo = BindingListSource.ViewContext.GetViewInfo(viewName);
if (null == viewInfo)
{
return(false);
}
BindingListSource.SetViewContext(BindingListSource.ViewContext, viewInfo);
return(true);
}
public DocumentGridForm(SkylineViewContext viewContext)
{
InitializeComponent();
BindingListSource.QueryLock = viewContext.SkylineDataSchema.QueryLock;
_originalFormTitle = Text;
BindingListSource.SetViewContext(viewContext);
BindingListSource.ListChanged += BindingListSourceOnListChanged;
_skylineWindow = viewContext.SkylineDataSchema.SkylineWindow;
var documentGridViewContext = viewContext as DocumentGridViewContext;
if (documentGridViewContext != null)
{
documentGridViewContext.BoundDataGridView = DataGridView;
}
}
public void AddRef()
{
if (Interlocked.Increment(ref _referenceCount) == 1)
{
_skylineDataSchema = new SkylineDataSchema(GroupComparisonModel.DocumentContainer,
SkylineDataSchema.GetLocalizedSchemaLocalizer());
var viewInfo = new ViewInfo(_skylineDataSchema, typeof(FoldChangeRow), GetDefaultViewSpec(new FoldChangeRow[0]))
.ChangeViewGroup(ViewGroup.BUILT_IN);
var rowSourceInfo = new RowSourceInfo(typeof(FoldChangeRow), new StaticRowSource(new FoldChangeRow[0]), new[] { viewInfo });
ViewContext = new GroupComparisonViewContext(_skylineDataSchema, new[] { rowSourceInfo });
_container = new Container();
_bindingListSource = new BindingListSource(_container);
_bindingListSource.SetViewContext(ViewContext, viewInfo);
GroupComparisonModel.ModelChanged += GroupComparisonModelOnModelChanged;
GroupComparisonModelOnModelChanged(GroupComparisonModel, new EventArgs());
}
}
public bool Export(CancellationToken cancellationToken, IProgressMonitor progressMonitor, ref IProgressStatus status, ViewInfo viewInfo, TextWriter writer, DsvWriter dsvWriter)
{
progressMonitor = progressMonitor ?? new SilentProgressMonitor();
using (var bindingListSource = new BindingListSource(cancellationToken))
{
bindingListSource.SetViewContext(this, viewInfo);
progressMonitor.UpdateProgress(status = status.ChangePercentComplete(5)
.ChangeMessage(Resources.ExportReportDlg_ExportReport_Writing_report));
WriteDataWithStatus(progressMonitor, ref status, writer, bindingListSource, dsvWriter);
if (progressMonitor.IsCanceled)
{
return(false);
}
writer.Flush();
progressMonitor.UpdateProgress(status = status.Complete());
}
return(true);
}
public void TestPivotResultsThenIsotopeLabel()
{
var assembly = typeof(LiveReportPivotTest).Assembly;
XmlSerializer documentSerializer = new XmlSerializer(typeof(SrmDocument));
// ReSharper disable once AssignNullToNotNullAttribute
var document = (SrmDocument)documentSerializer.Deserialize(
assembly.GetManifestResourceStream(typeof(ReportSpecConverterTest), "silac_1_to_4.sky"));
XmlSerializer reportSerializer = new XmlSerializer(typeof(ReportOrViewSpecList));
// ReSharper disable once AssignNullToNotNullAttribute
var views = (ReportOrViewSpecList)reportSerializer.Deserialize(
assembly.GetManifestResourceStream(typeof(ReportSpecConverterTest), "LiveReportPivots.skyr"));
var view = views.First(reportSpec => reportSpec.Name == "ResultSummaryPivotResultsThenLabelType").ViewSpec;
var bindingListSource = new BindingListSource();
var documentContainer = new MemoryDocumentContainer();
Assert.IsTrue(documentContainer.SetDocument(document, null));
var dataSchema = new SkylineDataSchema(documentContainer, DataSchemaLocalizer.INVARIANT);
bindingListSource.SetViewContext(new DocumentGridViewContext(dataSchema), new ViewInfo(dataSchema, typeof(Precursor), view));
var expectedColumnNames = new[] {
"PeptideSequence",
"Chromatograms Replicate",
"Chromatograms PeptideRetentionTime",
"light IsotopeLabelType",
"light MeanTotalArea",
"light Chromatograms TotalArea",
"heavy IsotopeLabelType",
"heavy MeanTotalArea",
"heavy Chromatograms TotalArea",
};
var actualColumnNames =
bindingListSource.GetItemProperties(null)
.Cast <PropertyDescriptor>()
.Select(pd => pd.DisplayName)
.ToArray();
CollectionAssert.AreEqual(expectedColumnNames, actualColumnNames);
}
public DocumentGridForm(SkylineViewContext viewContext, string text)
{
InitializeComponent();
if (!string.IsNullOrEmpty(text))
{
Text = text;
}
_originalFormTitle = Text;
if (viewContext == null) // For designer
{
return;
}
BindingListSource.QueryLock = viewContext.SkylineDataSchema.QueryLock;
BindingListSource.SetViewContext(viewContext);
BindingListSource.ListChanged += BindingListSourceOnListChanged;
_skylineWindow = viewContext.SkylineDataSchema.SkylineWindow;
var documentGridViewContext = viewContext as DocumentGridViewContext;
if (documentGridViewContext != null)
{
documentGridViewContext.BoundDataGridView = DataGridView;
}
}
public void CheckReport(ReportSpec reportSpec)
{
string message = string.Format("Report {0}", reportSpec.Name);
var converter = new ReportSpecConverter(_dataSchema);
var viewInfo = converter.Convert(reportSpec);
var report = Report.Load(reportSpec);
ResultSet resultSet;
try
{
resultSet = report.Execute(_database);
}
catch (Exception)
{
return;
}
using (var bindingListSource = new BindingListSource())
{
bindingListSource.SetViewContext(new SkylineViewContext(viewInfo.ParentColumn, GetRowSource(viewInfo)),
viewInfo);
var oldCaptions = resultSet.ColumnInfos.Select(columnInfo => columnInfo.Caption).ToArray();
var properties = bindingListSource.GetItemProperties(null);
IList resultRows = bindingListSource;
var newCaptions = properties.Cast <PropertyDescriptor>().Select(pd => pd.DisplayName).ToArray();
if (!oldCaptions.SequenceEqual(newCaptions))
{
CollectionAssert.AreEqual(oldCaptions, newCaptions, message);
}
if (resultSet.RowCount != resultRows.Count)
{
Assert.AreEqual(resultSet.RowCount, resultRows.Count, message);
}
resultRows = SortRows(resultRows, properties);
resultSet = SortResultSet(resultSet);
for (int iRow = 0; iRow < resultSet.RowCount; iRow++)
{
for (int iCol = 0; iCol < resultSet.ColumnInfos.Count; iCol++)
{
var propertyDescriptor = properties[iCol];
object oldValue = resultSet.GetRow(iRow)[iCol];
object newValue = propertyDescriptor.GetValue(resultRows[iRow]);
if (!Equals(oldValue, newValue))
{
Assert.AreEqual(oldValue, newValue,
message + "{0}:Values are not equal on Row {1} Column {2} ({3}) FullName:{4}",
message, iRow, iCol, propertyDescriptor.DisplayName, propertyDescriptor.Name);
}
}
}
foreach (char separator in new[] { ',', '\t' })
{
StringWriter oldStringWriter = new StringWriter();
var cultureInfo = LocalizationHelper.CurrentCulture;
ResultSet.WriteReportHelper(resultSet, separator, oldStringWriter, cultureInfo);
StringWriter newStringWriter = new StringWriter();
var skylineViewContext = (SkylineViewContext)bindingListSource.ViewContext;
ProgressStatus progressStatus = new ProgressStatus("Status");
skylineViewContext.Export(null, ref progressStatus, viewInfo, newStringWriter,
new DsvWriter(cultureInfo, separator));
var newLineSeparators = new[] { "\r\n" };
var oldLines = oldStringWriter.ToString().Split(newLineSeparators, StringSplitOptions.None);
var newLines = newStringWriter.ToString().Split(newLineSeparators, StringSplitOptions.None);
// TODO(nicksh): Old reports would hide columns for annotations that were not in the document.
bool anyHiddenColumns = resultSet.ColumnInfos.Any(column => column.IsHidden);
if (!anyHiddenColumns)
{
Assert.AreEqual(oldLines[0], newLines[0]);
CollectionAssert.AreEquivalent(oldLines, newLines);
}
}
}
}
private void UpdateViewContext()
{
RememberActiveView();
IRowSource rowSource = null;
Type rowType = null;
string builtInViewName = null;
if (_selectedIdentityPaths.Count == 1)
{
var identityPath = _selectedIdentityPaths[0];
if (identityPath.Length == 2)
{
rowSource = new PeptideResultList(new Peptide(_dataSchema, identityPath));
rowType = typeof(PeptideResult);
builtInViewName = "Peptide Results"; // Not L10N
}
else if (identityPath.Length == 3)
{
rowSource = new PrecursorResultList(new Precursor(_dataSchema, identityPath));
rowType = typeof(PrecursorResult);
builtInViewName = "Precursor Results"; // Not L10N
}
else if (identityPath.Length == 4)
{
rowSource = new TransitionResultList(new Transition(_dataSchema, identityPath));
rowType = typeof(TransitionResult);
builtInViewName = "Transition Results"; // Not L10N
}
}
else
{
// ReSharper disable PossibleMultipleEnumeration
var pathLengths = _selectedIdentityPaths.Select(path => path.Length).Distinct().ToArray();
if (pathLengths.Length == 1)
{
var pathLength = pathLengths[0];
if (pathLength == 3)
{
rowSource = new MultiPrecursorResultList(_dataSchema,
_selectedIdentityPaths.Select(idPath => new Precursor(_dataSchema, idPath)));
rowType = typeof(MultiPrecursorResult);
builtInViewName = "Multiple Precursor Results"; // Not L10N
}
if (pathLength == 4)
{
rowSource = new MultiTransitionResultList(_dataSchema,
_selectedIdentityPaths.Select(idPath => new Transition(_dataSchema, idPath)));
rowType = typeof(MultiTransitionResult);
builtInViewName = "Multiple Transition Results"; // Not L10N
}
}
// ReSharper restore PossibleMultipleEnumeration
}
if (rowSource == null)
{
rowSource = new ReplicateList(_dataSchema);
rowType = typeof(Replicate);
builtInViewName = "Replicates"; // Not L10N
}
var parentColumn = ColumnDescriptor.RootColumn(_dataSchema, rowType);
var builtInViewSpec = SkylineViewContext.GetDefaultViewInfo(parentColumn).GetViewSpec()
.SetName(builtInViewName).SetRowType(rowType);
if (null == BindingListSource.ViewContext ||
!BindingListSource.ViewContext.GetViewSpecList(ViewGroup.BUILT_IN.Id).ViewSpecs.Contains(builtInViewSpec))
{
var oldViewContext = BindingListSource.ViewContext as ResultsGridViewContext;
if (null != oldViewContext)
{
oldViewContext.RememberColumnWidths(DataGridView);
}
Debug.Assert(null != builtInViewName);
var builtInView = new ViewInfo(parentColumn, builtInViewSpec).ChangeViewGroup(ViewGroup.BUILT_IN);
var rowSourceInfo = new RowSourceInfo(rowSource, builtInView);
var viewContext = new ResultsGridViewContext(_dataSchema,
new[] { rowSourceInfo });
ViewInfo activeView = null;
string activeViewName;
if (Settings.Default.ResultsGridActiveViews.TryGetValue(rowSourceInfo.Name, out activeViewName))
{
activeView = viewContext.GetViewInfo(ViewName.Parse(activeViewName));
}
activeView = activeView ?? builtInView;
BindingListSource.SetViewContext(viewContext, activeView);
}
BindingListSource.RowSource = rowSource;
}
public void TestMapping()
{
var settings = SrmSettingsList.GetDefault();
var document = new SrmDocument(settings);
var documentContainer = new MemoryDocumentContainer();
documentContainer.SetDocument(document, null);
using (var database = new Database(settings))
{
var dataSchema = new SkylineDataSchema(documentContainer, DataSchemaLocalizer.INVARIANT);
var sessionFactory = database.SessionFactory;
foreach (var classMetaData in sessionFactory.GetAllClassMetadata().Values)
{
var tableType = classMetaData.GetMappedClass(EntityMode.Poco);
foreach (var propertyName in classMetaData.PropertyNames)
{
if (propertyName == "Protein" && tableType == typeof(DbProteinResult))
{
continue;
}
var queryDef = new QueryDef
{
Select = new[] { new ReportColumn(tableType, propertyName), }
};
var reportSpec = new ReportSpec("test", queryDef);
var newTableType = ReportSpecConverter.GetNewTableType(reportSpec);
Assert.IsNotNull(newTableType, "No table for type {0}", tableType);
var converter = new ReportSpecConverter(dataSchema);
var viewInfo = converter.Convert(reportSpec);
Assert.IsNotNull(viewInfo, "Unable to convert property {0} in table {1}", propertyName, tableType);
Assert.AreEqual(1, viewInfo.DisplayColumns.Count, "No conversion for property {0} in table {1}", propertyName, tableType);
Assert.IsNotNull(viewInfo.DisplayColumns[0].ColumnDescriptor, "Column not found for property {0} in table {1}", propertyName, tableType);
var report = Report.Load(reportSpec);
var resultSet = report.Execute(database);
var bindingListSource = new BindingListSource();
bindingListSource.SetViewContext(new SkylineViewContext(viewInfo.ParentColumn, Array.CreateInstance(viewInfo.ParentColumn.PropertyType, 0)), viewInfo);
var properties = bindingListSource.GetItemProperties(null);
var oldCaptions = resultSet.ColumnInfos.Select(columnInfo => columnInfo.Caption).ToArray();
var newCaptions = properties.Cast <PropertyDescriptor>().Select(pd => pd.DisplayName).ToArray();
if (oldCaptions.Length != newCaptions.Length)
{
Console.Out.WriteLine(oldCaptions);
}
CollectionAssert.AreEqual(oldCaptions, newCaptions, "Caption mismatch on {0} in {1}", propertyName, tableType);
for (int i = 0; i < resultSet.ColumnInfos.Count; i++)
{
var columnInfo = resultSet.ColumnInfos[i];
var formatAttribute = (FormatAttribute)properties[i].Attributes[typeof(FormatAttribute)];
string message = string.Format("Format problem on column converted from {0} in {1}",
columnInfo.ReportColumn.Column, columnInfo.ReportColumn.Table);
if (null == columnInfo.Format)
{
Assert.IsTrue(null == formatAttribute || null == formatAttribute.Format, message);
}
else
{
Assert.IsNotNull(formatAttribute, message);
Assert.AreEqual(columnInfo.Format, formatAttribute.Format, message);
}
if (columnInfo.IsNumeric)
{
Assert.IsNotNull(formatAttribute, message);
Assert.AreEqual(TextUtil.EXCEL_NA, formatAttribute.NullValue, message);
}
else
{
Assert.IsTrue(null == formatAttribute || null == formatAttribute.NullValue, message);
}
}
}
}
}
}
