protected bool Equals(ExplicitTransitionGroupValues other)
{
return(Equals(IonMobility, other.IonMobility) &&
Equals(CollisionEnergy, other.CollisionEnergy) &&
Equals(IonMobilityUnits, other.IonMobilityUnits) &&
Equals(CollisionalCrossSectionSqA, other.CollisionalCrossSectionSqA));
}
public ExplicitTransitionGroupValues(ExplicitTransitionGroupValues other)
: this(
(other == null) ? null : other.IonMobility,
(other == null) ? eIonMobilityUnits.none : other.IonMobilityUnits,
(other == null) ? null : other.CollisionalCrossSectionSqA)
{
}
public ExplicitTransitionGroupValues(ExplicitTransitionGroupValues other)
: this((other == null) ? null : other.CollisionEnergy,
(other == null) ? null : other.DriftTimeMsec,
(other == null) ? null : other.DriftTimeHighEnergyOffsetMsec,
(other == null) ? null : other.SLens,
(other == null) ? null : other.ConeVoltage,
(other == null) ? null : other.DeclusteringPotential,
(other == null) ? null : other.CompensationVoltage)
{
}
protected bool Equals(ExplicitTransitionGroupValues other)
{
return(Equals(CollisionEnergy, other.CollisionEnergy) &&
Equals(DriftTimeMsec, other.DriftTimeMsec) &&
Equals(DriftTimeHighEnergyOffsetMsec, other.DriftTimeHighEnergyOffsetMsec) &&
Equals(SLens, other.SLens) &&
Equals(ConeVoltage, other.ConeVoltage) &&
CompensationVoltage.Equals(other.CompensationVoltage) &&
DeclusteringPotential.Equals(other.DeclusteringPotential));
}
public ExplicitTransitionGroupValues(ExplicitTransitionGroupValues other)
: this(
(other == null) ? null : other.CollisionEnergy,
(other == null) ? null : other.DriftTimeMsec,
(other == null) ? null : other.DriftTimeHighEnergyOffsetMsec,
(other == null) ? null : other.SLens,
(other == null) ? null : other.ConeVoltage,
(other == null) ? null : other.DeclusteringPotential,
(other == null) ? null : other.CompensationVoltage)
{
}
protected bool Equals(ExplicitTransitionGroupValues other)
{
return(Equals(CollisionEnergy, other.CollisionEnergy) &&
Equals(IonMobility, other.IonMobility) &&
Equals(IonMobilityHighEnergyOffset, other.IonMobilityHighEnergyOffset) &&
Equals(IonMobilityUnits, other.IonMobilityUnits) &&
Equals(CollisionalCrossSectionSqA, other.CollisionalCrossSectionSqA) &&
Equals(SLens, other.SLens) &&
Equals(ConeVoltage, other.ConeVoltage) &&
CompensationVoltage.Equals(other.CompensationVoltage) &&
DeclusteringPotential.Equals(other.DeclusteringPotential));
}
public ExplicitTransitionGroupValues(ExplicitTransitionGroupValues other)
: this(
(other == null) ? null : other.CollisionEnergy,
(other == null) ? null : other.IonMobility,
(other == null) ? null : other.IonMobility,
(other == null) ? MsDataFileImpl.eIonMobilityUnits.none : other.IonMobilityUnits,
(other == null) ? null : other.CollisionalCrossSectionSqA,
(other == null) ? null : other.SLens,
(other == null) ? null : other.ConeVoltage,
(other == null) ? null : other.DeclusteringPotential,
(other == null) ? null : other.CompensationVoltage)
{
}
protected bool Equals(ExplicitTransitionGroupValues other)
{
return Equals(CollisionEnergy, other.CollisionEnergy) &&
Equals(DriftTimeMsec, other.DriftTimeMsec) &&
Equals(DriftTimeHighEnergyOffsetMsec, other.DriftTimeHighEnergyOffsetMsec) &&
Equals(SLens, other.SLens) &&
Equals(ConeVoltage, other.ConeVoltage) &&
CompensationVoltage.Equals(other.CompensationVoltage) &&
DeclusteringPotential.Equals(other.DeclusteringPotential);
}
public MoleculeInfo(string name, string formula, int charge, double mz, double monoMass, double averageMass,
IsotopeLabelType isotopeLabelType,
ExplicitRetentionTimeInfo explicitRetentionTime,
ExplicitTransitionGroupValues explicitTransitionGroupValues,
string note)
{
Name = name;
Formula = formula;
Charge = charge;
Mz = mz;
MonoMass = monoMass;
AverageMass = averageMass;
IsotopeLabelType = isotopeLabelType;
ExplicitRetentionTime = explicitRetentionTime;
ExplicitTransitionGroupValues = explicitTransitionGroupValues;
Note = note;
}
// We need some combination of:
// Formula and mz
// Formula and charge
// mz and charge
private MoleculeInfo ReadPrecursorOrProductColumns(SrmDocument document,
DataGridViewRow row,
bool getPrecursorColumns)
{
int indexName = getPrecursorColumns ? INDEX_MOLECULE_NAME : INDEX_PRODUCT_NAME;
int indexFormula = getPrecursorColumns ? INDEX_MOLECULE_FORMULA : INDEX_PRODUCT_FORMULA;
int indexMz = getPrecursorColumns ? INDEX_MOLECULE_MZ : INDEX_PRODUCT_MZ;
int indexCharge = getPrecursorColumns ? INDEX_MOLECULE_CHARGE : INDEX_PRODUCT_CHARGE;
var name = NullForEmpty(Convert.ToString(row.Cells[indexName].Value));
var formula = NullForEmpty(Convert.ToString(row.Cells[indexFormula].Value));
var note = NullForEmpty(Convert.ToString(row.Cells[INDEX_NOTE].Value));
IsotopeLabelType isotopeLabelType = null;
double mz;
bool badMz = false;
if (!double.TryParse(Convert.ToString(row.Cells[indexMz].Value), out mz))
{
if (!String.IsNullOrEmpty(Convert.ToString(row.Cells[indexMz].Value)))
{
badMz = true;
}
mz = 0;
}
if ((mz < 0) || badMz)
{
ShowTransitionError(new PasteError
{
Column = indexMz,
Line = row.Index,
Message = String.Format(Resources.PasteDlg_ReadPrecursorOrProductColumns_Invalid_m_z_value__0_, Convert.ToString(row.Cells[indexMz].Value))
});
return null;
}
int? charge = null;
int trycharge;
if (int.TryParse(Convert.ToString(row.Cells[indexCharge].Value), out trycharge))
charge = trycharge;
else if (!String.IsNullOrEmpty(Convert.ToString(row.Cells[indexCharge].Value)))
{
ShowTransitionError(new PasteError
{
Column = indexCharge,
Line = row.Index,
Message = String.Format(Resources.PasteDlg_ReadPrecursorOrProductColumns_Invalid_charge_value__0_, Convert.ToString(row.Cells[indexCharge].Value))
});
return null;
}
double dtmp;
double? collisionEnergy = null;
double? slens = null;
double? coneVoltage = null;
double? retentionTime = null;
double? retentionTimeWindow = null;
double? declusteringPotential = null;
double? compensationVoltage = null;
if (getPrecursorColumns)
{
var label = NullForEmpty(Convert.ToString(row.Cells[INDEX_LABEL_TYPE].Value));
if (label != null)
{
var typedMods = DocumentUiContainer.Document.Settings.PeptideSettings.Modifications.GetModificationsByName(label);
if (typedMods == null)
{
ShowTransitionError(new PasteError
{
Column = INDEX_LABEL_TYPE,
Line = row.Index,
Message = string.Format(Resources.SrmDocument_ReadLabelType_The_isotope_modification_type__0__does_not_exist_in_the_document_settings, label)
});
return null;
}
isotopeLabelType = typedMods.LabelType;
}
if (double.TryParse(Convert.ToString(row.Cells[INDEX_COLLISION_ENERGY].Value), out dtmp))
collisionEnergy = dtmp;
else if (!String.IsNullOrEmpty(Convert.ToString(row.Cells[INDEX_COLLISION_ENERGY].Value)))
{
ShowTransitionError(new PasteError
{
Column = INDEX_COLLISION_ENERGY,
Line = row.Index,
Message = String.Format(Resources.PasteDlg_ReadPrecursorOrProductColumns_Invalid_collision_energy_value__0_, Convert.ToString(row.Cells[INDEX_COLLISION_ENERGY].Value))
});
return null;
}
if (double.TryParse(Convert.ToString(row.Cells[INDEX_SLENS].Value), out dtmp))
slens = dtmp;
else if (!String.IsNullOrEmpty(Convert.ToString(row.Cells[INDEX_SLENS].Value)))
{
ShowTransitionError(new PasteError
{
Column = INDEX_SLENS,
Line = row.Index,
Message = String.Format(Resources.PasteDlg_ReadPrecursorOrProductColumns_Invalid_S_Lens_value__0_, Convert.ToString(row.Cells[INDEX_SLENS].Value))
});
return null;
}
if (double.TryParse(Convert.ToString(row.Cells[INDEX_CONE_VOLTAGE].Value), out dtmp))
coneVoltage = dtmp;
else if (!String.IsNullOrEmpty(Convert.ToString(row.Cells[INDEX_CONE_VOLTAGE].Value)))
{
ShowTransitionError(new PasteError
{
Column = INDEX_CONE_VOLTAGE,
Line = row.Index,
Message = String.Format(Resources.PasteDlg_ReadPrecursorOrProductColumns_Invalid_cone_voltage_value__0_, Convert.ToString(row.Cells[INDEX_CONE_VOLTAGE].Value))
});
return null;
}
if (double.TryParse(Convert.ToString(row.Cells[INDEX_DECLUSTERING_POTENTIAL].Value), out dtmp))
declusteringPotential = dtmp;
else if (!string.IsNullOrEmpty(Convert.ToString(row.Cells[INDEX_DECLUSTERING_POTENTIAL].Value)))
{
ShowTransitionError(new PasteError
{
Column = INDEX_DECLUSTERING_POTENTIAL,
Line = row.Index,
Message = String.Format(Resources.PasteDlg_ReadPrecursorOrProductColumns_Invalid_declustering_potential__0_, Convert.ToString(row.Cells[INDEX_DECLUSTERING_POTENTIAL].Value))
});
return null;
}
if (double.TryParse(Convert.ToString(row.Cells[INDEX_COMPENSATION_VOLTAGE].Value), out dtmp))
compensationVoltage = dtmp;
else if (!string.IsNullOrEmpty(Convert.ToString(row.Cells[INDEX_COMPENSATION_VOLTAGE].Value)))
{
ShowTransitionError(new PasteError
{
Column = INDEX_COMPENSATION_VOLTAGE,
Line = row.Index,
Message = String.Format(Resources.PasteDlg_ReadPrecursorOrProductColumns_Invalid_compensation_voltage__0_, Convert.ToString(row.Cells[INDEX_COMPENSATION_VOLTAGE].Value))
});
return null;
}
if (double.TryParse(Convert.ToString(row.Cells[INDEX_RETENTION_TIME].Value), out dtmp))
retentionTime = dtmp;
else if (!String.IsNullOrEmpty(Convert.ToString(row.Cells[INDEX_RETENTION_TIME].Value)))
{
ShowTransitionError(new PasteError
{
Column = INDEX_RETENTION_TIME,
Line = row.Index,
Message = String.Format(Resources.PasteDlg_ReadPrecursorOrProductColumns_Invalid_retention_time_value__0_, Convert.ToString(row.Cells[INDEX_RETENTION_TIME].Value))
});
return null;
}
if (double.TryParse(Convert.ToString(row.Cells[INDEX_RETENTION_TIME_WINDOW].Value), out dtmp))
{
retentionTimeWindow = dtmp;
if (!retentionTime.HasValue)
{
ShowTransitionError(new PasteError
{
Column = INDEX_RETENTION_TIME_WINDOW,
Line = row.Index,
Message = Resources.Peptide_ExplicitRetentionTimeWindow_Explicit_retention_time_window_requires_an_explicit_retention_time_value_
});
return null;
}
}
else if (!String.IsNullOrEmpty(Convert.ToString(row.Cells[INDEX_RETENTION_TIME_WINDOW].Value)))
{
ShowTransitionError(new PasteError
{
Column = INDEX_RETENTION_TIME_WINDOW,
Line = row.Index,
Message = String.Format(Resources.PasteDlg_ReadPrecursorOrProductColumns_Invalid_retention_time_window_value__0_, Convert.ToString(row.Cells[INDEX_RETENTION_TIME_WINDOW].Value))
});
return null;
}
}
double? driftTimePrecursorMsec = null;
if (double.TryParse(Convert.ToString(row.Cells[INDEX_MOLECULE_DRIFT_TIME_MSEC].Value), out dtmp))
driftTimePrecursorMsec = dtmp;
else if (!String.IsNullOrEmpty(Convert.ToString(row.Cells[INDEX_MOLECULE_DRIFT_TIME_MSEC].Value)))
{
ShowTransitionError(new PasteError
{
Column = INDEX_MOLECULE_DRIFT_TIME_MSEC,
Line = row.Index,
Message = String.Format(Resources.PasteDlg_ReadPrecursorOrProductColumns_Invalid_drift_time_value__0_, Convert.ToString(row.Cells[INDEX_MOLECULE_DRIFT_TIME_MSEC].Value))
});
return null;
}
double? driftTimeHighEnergyOffsetMsec = null;
if (double.TryParse(Convert.ToString(row.Cells[INDEX_HIGH_ENERGY_DRIFT_TIME_OFFSET_MSEC].Value), out dtmp))
driftTimeHighEnergyOffsetMsec = dtmp;
else if (!String.IsNullOrEmpty(Convert.ToString(row.Cells[INDEX_HIGH_ENERGY_DRIFT_TIME_OFFSET_MSEC].Value)))
{
ShowTransitionError(new PasteError
{
Column = INDEX_HIGH_ENERGY_DRIFT_TIME_OFFSET_MSEC,
Line = row.Index,
Message = String.Format(Resources.PasteDlg_ReadPrecursorOrProductColumns_Invalid_drift_time_high_energy_offset_value__0_, Convert.ToString(row.Cells[INDEX_HIGH_ENERGY_DRIFT_TIME_OFFSET_MSEC].Value))
});
return null;
}
string errMessage = String.Format(getPrecursorColumns
? Resources.PasteDlg_ValidateEntry_Error_on_line__0___Precursor_needs_values_for_any_two_of__Formula__m_z_or_Charge_
: Resources.PasteDlg_ValidateEntry_Error_on_line__0___Product_needs_values_for_any_two_of__Formula__m_z_or_Charge_, row.Index+1);
int errColumn = indexFormula;
int countValues = 0;
if (charge.HasValue && charge.Value != 0)
countValues++;
if (mz > 0)
countValues++;
if (NullForEmpty(formula) != null)
countValues++;
if (countValues >= 2) // Do we have at least 2 of charge, mz, formula?
{
double monoMass;
double averageMmass;
if (driftTimePrecursorMsec.HasValue)
{
if (!driftTimeHighEnergyOffsetMsec.HasValue)
{
driftTimeHighEnergyOffsetMsec = 0;
}
}
else
{
driftTimeHighEnergyOffsetMsec = null; // Offset without a base value isn't useful
}
var retentionTimeInfo = retentionTime.HasValue
? new ExplicitRetentionTimeInfo(retentionTime.Value, retentionTimeWindow)
: null;
var explicitTransitionGroupValues = new ExplicitTransitionGroupValues(collisionEnergy, driftTimePrecursorMsec, driftTimeHighEnergyOffsetMsec, slens,
coneVoltage, declusteringPotential, compensationVoltage);
var massOk = true;
var massTooLow = false;
string massErrMsg = null;
var absCharge = Math.Abs(charge ?? 0);
if (getPrecursorColumns && absCharge != 0 && (absCharge < TransitionGroup.MIN_PRECURSOR_CHARGE || absCharge > TransitionGroup.MAX_PRECURSOR_CHARGE))
{
errMessage = String.Format(Resources.Transition_Validate_Precursor_charge__0__must_be_non_zero_and_between__1__and__2__,
charge, -TransitionGroup.MAX_PRECURSOR_CHARGE, TransitionGroup.MAX_PRECURSOR_CHARGE);
errColumn = indexCharge;
}
else if (!getPrecursorColumns && absCharge != 0 && (absCharge < Transition.MIN_PRODUCT_CHARGE || absCharge > Transition.MAX_PRODUCT_CHARGE))
{
errMessage = String.Format(Resources.Transition_Validate_Product_ion_charge__0__must_be_non_zero_and_between__1__and__2__,
charge, -Transition.MAX_PRODUCT_CHARGE, Transition.MAX_PRODUCT_CHARGE);
errColumn = indexCharge;
}
else if (NullForEmpty(formula) != null)
{
// We have a formula
try
{
if (mz > 0)
{
// Is the ion's formula the old style where user expected us to add a hydrogen?
double? mzCalc;
charge = ValidateFormulaWithMz(document, ref formula, mz, charge, out monoMass, out averageMmass, out mzCalc);
row.Cells[indexFormula].Value = formula;
massOk = monoMass < CustomIon.MAX_MASS && averageMmass < CustomIon.MAX_MASS &&
!(massTooLow = charge.HasValue && (monoMass < CustomIon.MIN_MASS || averageMmass < CustomIon.MIN_MASS)); // Null charge => masses are 0 but meaningless
if (massOk)
{
if (charge.HasValue)
{
row.Cells[indexCharge].Value = charge.Value;
return new MoleculeInfo(name, formula, charge.Value, mz, monoMass, averageMmass, isotopeLabelType, retentionTimeInfo, explicitTransitionGroupValues, note);
}
else if (mzCalc.HasValue)
{
// There was an initial charge value, but it didn't make sense with formula and proposed mz
errMessage = String.Format(getPrecursorColumns
? Resources.PasteDlg_ReadPrecursorOrProductColumns_Error_on_line__0___Precursor_m_z__1__does_not_agree_with_value__2__as_calculated_from_ion_formula_and_charge_state__delta____3___Transition_Settings___Instrument___Method_match_tolerance_m_z____4_____Correct_the_m_z_value_in_the_table__or_leave_it_blank_and_Skyline_will_calculate_it_for_you_
: Resources.PasteDlg_ReadPrecursorOrProductColumns_Error_on_line__0___Product_m_z__1__does_not_agree_with_value__2__as_calculated_from_ion_formula_and_charge_state__delta____3___Transition_Settings___Instrument___Method_match_tolerance_m_z____4_____Correct_the_m_z_value_in_the_table__or_leave_it_blank_and_Skyline_will_calculate_it_for_you_,
row.Index + 1, (float)mz, (float)mzCalc.Value, (float)(mzCalc.Value - mz), (float)document.Settings.TransitionSettings.Instrument.MzMatchTolerance);
errColumn = indexMz;
}
else
{
// No charge state given, and mz makes no sense with formula
errMessage = String.Format(getPrecursorColumns
? Resources.PasteDlg_ValidateEntry_Error_on_line__0___Precursor_formula_and_m_z_value_do_not_agree_for_any_charge_state_
: Resources.PasteDlg_ValidateEntry_Error_on_line__0___Product_formula_and_m_z_value_do_not_agree_for_any_charge_state_, row.Index+1);
errColumn = indexMz;
}
}
}
else if (charge.HasValue)
{
// Get the mass from the formula, and mz from that and charge
mz = ValidateFormulaWithCharge(document, formula, charge.Value, out monoMass, out averageMmass);
massOk = !((monoMass >= CustomIon.MAX_MASS || averageMmass >= CustomIon.MAX_MASS)) &&
!(massTooLow = (monoMass < CustomIon.MIN_MASS || averageMmass < CustomIon.MIN_MASS));
row.Cells[indexMz].Value = mz;
if (massOk)
return new MoleculeInfo(name, formula, charge.Value, mz, monoMass, averageMmass, isotopeLabelType, retentionTimeInfo, explicitTransitionGroupValues, note);
}
}
catch (InvalidDataException x)
{
massOk = false;
massErrMsg = x.Message;
}
}
else if (mz != 0 && charge.HasValue)
{
// No formula, just use charge and m/z
monoMass = averageMmass = BioMassCalc.CalculateIonMassFromMz(mz, charge.Value);
massOk = monoMass < CustomIon.MAX_MASS && averageMmass < CustomIon.MAX_MASS &&
!(massTooLow = (monoMass < CustomIon.MIN_MASS || averageMmass < CustomIon.MIN_MASS));
errColumn = indexMz;
if (massOk)
return new MoleculeInfo(name, formula, charge.Value, mz, monoMass, averageMmass, isotopeLabelType, retentionTimeInfo, explicitTransitionGroupValues, note);
}
if (massTooLow)
{
errMessage = massErrMsg ?? string.Format(
Resources
.EditCustomMoleculeDlg_OkDialog_Custom_molecules_must_have_a_mass_greater_than_or_equal_to__0__,
CustomIon.MIN_MASS);
}
else if (!massOk)
{
errMessage = massErrMsg ?? string.Format(
Resources
.EditCustomMoleculeDlg_OkDialog_Custom_molecules_must_have_a_mass_less_than_or_equal_to__0__,
CustomIon.MAX_MASS);
}
}
ShowTransitionError(new PasteError
{
Column = errColumn,
Line = row.Index,
Message = errMessage
});
return null;
}
/// <summary>
/// For creating at the Molecule level (create molecule and first transition group) or modifying at the transition level
/// Null values imply "don't ask user for this"
/// </summary>
public EditCustomMoleculeDlg(SkylineWindow parent, string title, Identity initialId, IEnumerable<Identity> existingIds, int minCharge, int maxCharge,
SrmSettings settings, string defaultName, string defaultFormula, int? defaultCharge, ExplicitTransitionGroupValues explicitAttributes,
ExplicitRetentionTimeInfo explicitRetentionTime,
IsotopeLabelType defaultIsotopeLabelType, bool enableFormulaEditing = true)
{
Text = title;
_parent = parent;
_initialId = initialId;
_existingIds = existingIds;
_minCharge = minCharge;
_maxCharge = maxCharge;
_transitionSettings = settings != null ? settings.TransitionSettings : null;
_peptideSettings = settings != null ? settings.PeptideSettings : null;
InitializeComponent();
NameText = defaultName;
var needOptionalValuesBox = explicitRetentionTime != null || explicitAttributes != null;
var heightDelta = 0;
if (explicitAttributes == null)
{
ResultExplicitTransitionGroupValues = null;
labelCollisionEnergy.Visible = false;
textCollisionEnergy.Visible = false;
labelSLens.Visible = false;
textSLens.Visible = false;
labelCompensationVoltage.Visible = false;
textCompensationVoltage.Visible = false;
labelConeVoltage.Visible = false;
textConeVoltage.Visible = false;
labelDriftTimeHighEnergyOffsetMsec.Visible = false;
textDriftTimeHighEnergyOffsetMsec.Visible = false;
labelDriftTimeMsec.Visible = false;
textDriftTimeMsec.Visible = false;
if (needOptionalValuesBox)
{
// We blanked out everything but the retention time
var vmargin = labelRetentionTime.Location.Y;
var newHeight = textRetentionTime.Location.Y + textRetentionTime.Height + vmargin;
heightDelta = groupBoxOptionalValues.Height - newHeight;
groupBoxOptionalValues.Height = newHeight;
}
}
else
{
ResultExplicitTransitionGroupValues = new ExplicitTransitionGroupValues(explicitAttributes);
}
string labelAverage = defaultCharge.HasValue
? Resources.EditCustomMoleculeDlg_EditCustomMoleculeDlg_A_verage_m_z_
: Resources.EditCustomMoleculeDlg_EditCustomMoleculeDlg_A_verage_mass_;
string labelMono = defaultCharge.HasValue
? Resources.EditCustomMoleculeDlg_EditCustomMoleculeDlg__Monoisotopic_m_z_
: Resources.EditCustomMoleculeDlg_EditCustomMoleculeDlg__Monoisotopic_mass_;
_formulaBox =
new FormulaBox(Resources.EditMeasuredIonDlg_EditMeasuredIonDlg_Ion__chemical_formula_,
labelAverage,
labelMono,
defaultCharge)
{
Formula = defaultFormula,
Location = new Point(textName.Left, textName.Bottom + 12)
};
Controls.Add(_formulaBox);
_formulaBox.TabIndex = 2;
_formulaBox.Enabled = enableFormulaEditing;
bool needCharge = defaultCharge.HasValue;
textCharge.Visible = labelCharge.Visible = needCharge;
Charge = defaultCharge ?? 0;
if (needOptionalValuesBox && !needCharge)
{
heightDelta += groupBoxOptionalValues.Location.Y - labelCharge.Location.Y;
groupBoxOptionalValues.Location = new Point(groupBoxOptionalValues.Location.X, labelCharge.Location.Y);
}
if (explicitRetentionTime == null)
{
// Don't ask user for retetention times
RetentionTime = null;
RetentionTimeWindow = null;
labelRetentionTime.Visible = false;
labelRetentionTimeWindow.Visible = false;
textRetentionTime.Visible = false;
textRetentionTimeWindow.Visible = false;
if (needOptionalValuesBox)
{
var rtHeight = labelCollisionEnergy.Location.Y - labelRetentionTimeWindow.Location.Y;
groupBoxOptionalValues.Height -= rtHeight;
heightDelta += rtHeight;
}
}
else
{
RetentionTime = explicitRetentionTime.RetentionTime;
RetentionTimeWindow = explicitRetentionTime.RetentionTimeWindow;
}
if (!needOptionalValuesBox)
{
groupBoxOptionalValues.Visible = false;
heightDelta = groupBoxOptionalValues.Height;
}
// Initialize label
if (settings != null && defaultIsotopeLabelType != null)
{
_driverLabelType = new PeptideSettingsUI.LabelTypeComboDriver(comboIsotopeLabelType,
settings.PeptideSettings.Modifications, null, null, null, null)
{
SelectedName = defaultIsotopeLabelType.Name
};
}
else
{
comboIsotopeLabelType.Visible = false;
labelIsotopeLabelType.Visible = false;
}
Height -= heightDelta;
}
