protected override void Context() { base.Context(); _sbmlModel = new Model(3, 1); _sbmlInformation = new SBMLInformation(); //one compartment reaction _reaction = _sbmlModel.createReaction(); _reaction.setId("r1"); //reaction partner var s1 = _sbmlModel.createSpecies(); s1.setId("s1"); s1.setCompartment("default"); var s2 = _sbmlModel.createSpecies(); s2.setId("s2"); s2.setCompartment("default"); var m = new MoleculeInformation(s1); var m2 = new MoleculeInformation(s2); _sbmlInformation.MoleculeInformation.Add(m); _sbmlInformation.MoleculeInformation.Add(m2); //SRef var s1Ref = _reaction.createReactant(); s1Ref.setSpecies("s1"); s1Ref.setStoichiometry(1); var s2Ref = _reaction.createProduct(); s2Ref.setSpecies("s2"); s2Ref.setStoichiometry(2); _reaction.addProduct(s2Ref); //Modifier var mod = _reaction.createModifier(); mod.setId("mod"); mod.setName("mod"); mod.setSpecies("s1"); //Kinetic Law var kl = _reaction.createKineticLaw(); kl.setId("kl"); kl.setMath(libsbml.parseFormula("2*3")); }
public void test_Reaction_createKineticLaw() { Reaction r = new Reaction(2,2); KineticLaw kl = r.createKineticLaw(); assertTrue( r.isSetKineticLaw() == true ); assertTrue( (kl).getLevel() == 2 ); assertTrue( (kl).getVersion() == 2 ); r = null; }
public void test_KineticLaw_parent_create() { Reaction r = new Reaction(2,4); KineticLaw kl = r.createKineticLaw(); assertTrue( r == kl.getParentSBMLObject() ); r = null; }
public void test_KineticLaw_parent_NULL() { Reaction r = new Reaction(2,4); KineticLaw kl = r.createKineticLaw(); Parameter p = kl.createParameter(); assertTrue( r == kl.getParentSBMLObject() ); assertTrue( r == p.getAncestorOfType(libsbml.SBML_REACTION) ); assertTrue( kl == p.getAncestorOfType(libsbml.SBML_KINETIC_LAW) ); KineticLaw kl1 = kl.clone(); assertTrue( kl1.getParentSBMLObject() == null ); assertTrue( kl1.getParameter(0).getAncestorOfType(libsbml.SBML_REACTION) == null ); assertTrue( kl1 == kl1.getParameter(0).getAncestorOfType(libsbml.SBML_KINETIC_LAW) ); r = null; }
public void test_KineticLaw_ancestor_create() { Reaction r = new Reaction(2,4); KineticLaw kl = r.createKineticLaw(); assertTrue( kl.getAncestorOfType(libsbml.SBML_REACTION) == r ); assertTrue( kl.getAncestorOfType(libsbml.SBML_DELAY) == null ); assertTrue( kl.getAncestorOfType(libsbml.SBML_MODEL) == null ); assertTrue( kl.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); KineticLaw obj = r.getKineticLaw(); assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DELAY) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); r = null; }