protected override void Context()
{
base.Context();
_sbmlModel = new Model(3, 1);
_sbmlInformation = new SBMLInformation();
//one compartment reaction
_reaction = _sbmlModel.createReaction();
_reaction.setId("r1");
//reaction partner
var s1 = _sbmlModel.createSpecies();
s1.setId("s1");
s1.setCompartment("default");
var s2 = _sbmlModel.createSpecies();
s2.setId("s2");
s2.setCompartment("default");
var m = new MoleculeInformation(s1);
var m2 = new MoleculeInformation(s2);
_sbmlInformation.MoleculeInformation.Add(m);
_sbmlInformation.MoleculeInformation.Add(m2);
//SRef
var s1Ref = _reaction.createReactant();
s1Ref.setSpecies("s1");
s1Ref.setStoichiometry(1);
var s2Ref = _reaction.createProduct();
s2Ref.setSpecies("s2");
s2Ref.setStoichiometry(2);
_reaction.addProduct(s2Ref);
//Modifier
var mod = _reaction.createModifier();
mod.setId("mod");
mod.setName("mod");
mod.setSpecies("s1");
//Kinetic Law
var kl = _reaction.createKineticLaw();
kl.setId("kl");
kl.setMath(libsbml.parseFormula("2*3"));
}
public void test_Reaction_createKineticLaw()
{
Reaction r = new Reaction(2,2);
KineticLaw kl = r.createKineticLaw();
assertTrue( r.isSetKineticLaw() == true );
assertTrue( (kl).getLevel() == 2 );
assertTrue( (kl).getVersion() == 2 );
r = null;
}
public void test_KineticLaw_parent_create()
{
Reaction r = new Reaction(2,4);
KineticLaw kl = r.createKineticLaw();
assertTrue( r == kl.getParentSBMLObject() );
r = null;
}
public void test_KineticLaw_parent_NULL()
{
Reaction r = new Reaction(2,4);
KineticLaw kl = r.createKineticLaw();
Parameter p = kl.createParameter();
assertTrue( r == kl.getParentSBMLObject() );
assertTrue( r == p.getAncestorOfType(libsbml.SBML_REACTION) );
assertTrue( kl == p.getAncestorOfType(libsbml.SBML_KINETIC_LAW) );
KineticLaw kl1 = kl.clone();
assertTrue( kl1.getParentSBMLObject() == null );
assertTrue( kl1.getParameter(0).getAncestorOfType(libsbml.SBML_REACTION) == null );
assertTrue( kl1 == kl1.getParameter(0).getAncestorOfType(libsbml.SBML_KINETIC_LAW) );
r = null;
}
public void test_KineticLaw_ancestor_create()
{
Reaction r = new Reaction(2,4);
KineticLaw kl = r.createKineticLaw();
assertTrue( kl.getAncestorOfType(libsbml.SBML_REACTION) == r );
assertTrue( kl.getAncestorOfType(libsbml.SBML_DELAY) == null );
assertTrue( kl.getAncestorOfType(libsbml.SBML_MODEL) == null );
assertTrue( kl.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
KineticLaw obj = r.getKineticLaw();
assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r );
assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == null );
assertTrue( obj.getAncestorOfType(libsbml.SBML_DELAY) == null );
assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
r = null;
}