public void TestConstructor () {
Definition container = new Definition();
container.Definitions.Add( new Definition( "Def", new Any( "Any", 1, 3, 1 ) ) );
Use use = new Use { Name = "Use" };
use.ReferTo( container, "Def" );
Assert.AreEqual( "Use", use.Name );
Assert.AreEqual( "Def", use.ReferencedDefinition.Name );
}
public void TestMatch ()
{
Definition def = new Definition();
def.Definitions.Add( new Definition("Def", new Motif("Motif", AlphabetType.DNA, "atg", 0.0)) );
Sequence seq = new Sequence(AlphabetType.DNA, "atgc");
Use use = new Use{ Name = "Use" };
use.ReferTo( def, "Def" );
Match match = use.Match(seq, 1);
Assert.AreEqual(use, match.MatchPattern);
Assert.AreEqual(1, match.Start);
Assert.AreEqual(3, match.Length);
Assert.AreEqual(1, match.Strand);
Assert.AreEqual(1.0, match.Similarity, 1e-2);
}