private static void timer_Tick()
{
bool foundCompletedRun = false;
//check if runs are complete but not already uploaded
foreach (string folder in Directory.GetDirectories(config.getAnalysisFolderPath))
{
if (File.Exists(Path.Combine(folder, @"RTAComplete.txt")) && !File.Exists(Path.Combine(folder, @"TransferComplete.txt")))
{
Framework.WriteLog(@"Found job: " + Path.Combine(config.getAnalysisFolderPath, folder), 0);
foundCompletedRun = true;
//transfer data to cluster
try
{
TransferJob job = new TransferJob(folder, config);
job.TransferData();
} catch (Exception e) {
Framework.WriteLog(e.Message, -1);
foundCompletedRun = false;
}
}
}
//delete old runs
if (foundCompletedRun && config.getDeleteOldestLocalRun)
{
//get dir list and sort by date creation
var di = new DirectoryInfo(config.getAnalysisFolderPath);
var directories = di.EnumerateDirectories()
.OrderBy(d => d.CreationTime)
.Select(d => d.Name)
.ToList();
//delete subfolders; protect the last maxSubDirsToKeep (newest) runs
for (int n = 0; n < directories.Count - 5; ++n)
{
if (File.Exists(Path.Combine(directories[n], @"TransferComplete.txt")))
{
try
{
Framework.WriteLog(@"Deleting folder: " + Path.Combine(config.getAnalysisFolderPath, directories[n]), 0);
//Directory.Delete(localRunDir + directories[n], true);
}
catch (Exception e)
{
Framework.WriteLog(@"Could not delete folder: " + e.ToString(), -1);
}
}
}
if (config.getIsMiSeqHost)
{
try
{
Framework.WriteLog(@"Deleting and making folder: " + config.getOutputFolderPath, 0);
//Directory.Delete(config.getOutputFolderPath, true);
//Directory.CreateDirectory(config.getOutputFolderPath);
}
catch (Exception e)
{
Framework.WriteLog(@"Could not delete folder: " + e.ToString(), -1);
}
}
}
}
private static void timer_Tick()
{
bool foundCompletedRun = false;
//check if runs are complete but not already uploaded
foreach (string folder in Directory.GetDirectories(config.getAnalysisFolderPath))
{
if (File.Exists(Path.Combine(folder, @"RTAComplete.txt")) && !File.Exists(Path.Combine(folder, @"TransferComplete.txt")))
{
Framework.WriteLog(@"Found job: " + Path.Combine(config.getAnalysisFolderPath, folder), 0);
foundCompletedRun = true;
//transfer data to cluster
try
{
TransferJob job = new TransferJob(folder, config);
job.TransferData();
} catch (Exception e) {
Framework.WriteLog(e.Message, -1);
foundCompletedRun = false;
}
}
}
//delete old runs
if (foundCompletedRun && config.getDeleteOldestLocalRun)
{
//get dir list and sort by date creation
var di = new DirectoryInfo(config.getAnalysisFolderPath);
var directories = di.EnumerateDirectories()
.OrderBy(d => d.CreationTime)
.Select(d => d.Name)
.ToList();
//delete subfolders; protect the last maxSubDirsToKeep (newest) runs
for (int n = 0; n < directories.Count - 5; ++n)
{
if (File.Exists(Path.Combine(directories[n], @"TransferComplete.txt")))
{
try
{
Framework.WriteLog(@"Deleting folder: " + Path.Combine(config.getAnalysisFolderPath, directories[n]), 0);
//Directory.Delete(localRunDir + directories[n], true);
}
catch (Exception e)
{
Framework.WriteLog(@"Could not delete folder: " + e.ToString(), -1);
}
}
}
if (config.getIsMiSeqHost)
{
try
{
Framework.WriteLog(@"Deleting and making folder: " + config.getOutputFolderPath, 0);
//Directory.Delete(config.getOutputFolderPath, true);
//Directory.CreateDirectory(config.getOutputFolderPath);
}
catch (Exception e)
{
Framework.WriteLog(@"Could not delete folder: " + e.ToString(), -1);
}
}
}
}
