/// <summary> /// Computes instants speeds from a coordinate trace and stores the result /// in the provided buffer /// </summary> /// <param name="path">The movement path</param> /// <param name="frameRate">The framerate at acquisition</param> /// <param name="isb">The buffer to store the speed in</param> public void ComputeInstantSpeeds(CentroidBuffer path, int frameRate, InstantSpeedBuffer isb) { if (IsDisposed) { throw new ObjectDisposedException(this.ToString()); } if (isb.Size.width != path.Size.width) { throw new ArgumentException("Path length and size of speed buffer must be the same!"); } //Check that our buffers are present and match, otherwise fix if (_calc1 == null) { _calc1 = new CentroidBuffer(path.Size.width); _calc2 = new CentroidBuffer(path.Size.width); } else if (_calc1.Size.width != path.Size.width) { _calc1.Dispose(); _calc2.Dispose(); _calc1 = new CentroidBuffer(path.Size.width); _calc2 = new CentroidBuffer(path.Size.width); } //compute difference trace subtracting the position at t from the position at t+1 by subtracting the unshifted input buffer from its shifted version //the result gets stored in calc1 with the first value being 0 ip.ippiSet_32f_C1R(0, _calc1.Buffer, _calc1.Stride, _calc1.Size); IppHelper.IppCheckCall(ip.ippiSub_32f_C1R(path.Buffer, path.Stride, (float *)((byte *)path.Buffer + 4), path.Stride, (float *)((byte *)_calc1.Buffer + 4), _calc1.Stride, new IppiSize(path.Size.width - 1, 2))); //square the difference trace, storing the result in _calc2 IppHelper.IppCheckCall(ip.ippiSqr_32f_C1R(_calc1.Buffer, _calc1.Stride, _calc2.Buffer, _calc2.Stride, _calc1.Size)); //Add the values of the x and y coordinates, storing the sum of squares in the first row of _calc1 IppHelper.IppCheckCall(ip.ippiAdd_32f_C1R(_calc2.Buffer, _calc2.Stride, (float *)((byte *)_calc2.Buffer + _calc2.Stride), _calc2.Stride, _calc1.Buffer, _calc1.Stride, new IppiSize(_calc1.Size.width, 1))); //Compute the square root of the sum-of-squares and copy the result to the first row of _calc2 IppHelper.IppCheckCall(ip.ippiSqrt_32f_C1R(_calc1.Buffer, _calc1.Stride, _calc2.Buffer, _calc2.Stride, new IppiSize(_calc1.Size.width, 1))); //Multiply the distances by the framerate and store the result in our instant speed buffer IppHelper.IppCheckCall(ip.ippiMulC_32f_C1R(_calc2.Buffer, _calc2.Stride, frameRate, isb.Buffer, isb.Stride, isb.Size)); }
/// <summary> /// Implements coordinate smoothing analogous to using filtfilt in matlab with a step function kernel /// (moving average with no peak displacement) /// </summary> /// <param name="src">The source track to smoothen</param> /// <param name="dst">The destination buffer for the smoothened track</param> /// <param name="windowSize">The windowsize for averaging</param> public void SmoothenTrack(CentroidBuffer src, CentroidBuffer dst, int windowSize) { if (IsDisposed) { throw new ObjectDisposedException(this.ToString()); } if (src.Size.width != dst.Size.width) { throw new ArgumentException("Source and destination buffers need to have the same size!"); } //For the internal buffers we require a size that fits both the coordinate buffer we //intend to filter as well as the border pixels required for filtering int borderSize = (int)Math.Ceiling(windowSize / 2.0); int reqSize = src.Size.width + borderSize * 2; //Adjust internal buffers if necessary if (_calc1 == null) { _calc1 = new CentroidBuffer(reqSize); _calc2 = new CentroidBuffer(reqSize); } else if (_calc1.Size.width != reqSize) { _calc1.Dispose(); _calc2.Dispose(); _calc1 = new CentroidBuffer(reqSize); _calc2 = new CentroidBuffer(reqSize); } if (_kernel == null) { _kernelSize = windowSize; _kernel = (float *)Marshal.AllocHGlobal(_kernelSize * 4); int i = 0; while (i < _kernelSize) { _kernel[i++] = 1 / (float)_kernelSize; } } else if (_kernelSize != windowSize) { Marshal.FreeHGlobal((IntPtr)_kernel); _kernelSize = windowSize; _kernel = (float *)Marshal.AllocHGlobal(_kernelSize * 4); int i = 0; while (i < _kernelSize) { _kernel[i++] = 1 / (float)_kernelSize; } } //filter parameters IppiSize regionSize = new IppiSize(src.Size.width, 1); IppiPoint anchor = new IppiPoint(borderSize, 0); IppiSize kernelSize = new IppiSize(_kernelSize, 1); float * calc1XStart = (float *)((byte *)_calc1.Buffer + borderSize * 4); float * calc1YStart = (float *)((byte *)_calc1.Buffer + borderSize * 4 + _calc1.Stride); float * calc2XStart = (float *)((byte *)_calc2.Buffer + borderSize * 4); float * calc2YStart = (float *)((byte *)_calc2.Buffer + borderSize * 4 + _calc2.Stride); //Copy src buffer adding borders IppHelper.IppCheckCall(ip.ippiCopyConstBorder_32f_C1R(src.Buffer, src.Stride, src.Size, _calc1.Buffer, _calc1.Stride, _calc1.Size, 0, borderSize, 0)); //Fill calc2 to have borders ready after filtering IppHelper.IppCheckCall(ip.ippiSet_32f_C1R(0, _calc2.Buffer, _calc2.Stride, _calc2.Size)); //filter x-coordinates with our kernel IppHelper.IppCheckCall(ip.ippiFilter_32f_C1R(calc1XStart, _calc1.Stride, calc2XStart, _calc2.Stride, regionSize, _kernel, kernelSize, anchor)); //filter y-coordinates with our kernel IppHelper.IppCheckCall(ip.ippiFilter_32f_C1R(calc1YStart, _calc1.Stride, calc2YStart, _calc2.Stride, regionSize, _kernel, kernelSize, anchor)); //invert buffer - mirror on vertical axis IppHelper.IppCheckCall(ip.ippiMirror_32f_C1R(_calc2.Buffer, _calc2.Stride, _calc1.Buffer, _calc1.Stride, _calc2.Size, IppiAxis.ippAxsVertical)); //filter x-coordinates with our kernel - now on inverted buffer IppHelper.IppCheckCall(ip.ippiFilter_32f_C1R(calc1XStart, _calc1.Stride, calc2XStart, _calc2.Stride, regionSize, _kernel, kernelSize, anchor)); //filter y-coordinates with our kernel - now on inverted buffer IppHelper.IppCheckCall(ip.ippiFilter_32f_C1R(calc1YStart, _calc1.Stride, calc2YStart, _calc2.Stride, regionSize, _kernel, kernelSize, anchor)); //flip buffer back IppHelper.IppCheckCall(ip.ippiMirror_32f_C1R(_calc2.Buffer, _calc2.Stride, _calc1.Buffer, _calc1.Stride, _calc2.Size, IppiAxis.ippAxsVertical)); //copy to dest IppHelper.IppCheckCall(ip.ippiCopy_32f_C1R(calc1XStart, _calc1.Stride, dst.Buffer, dst.Stride, dst.Size)); }