コード例 #1
0
ファイル: Program.cs プロジェクト: raudut/Infernet-asthme
        public static void RunExperiments(Outputter outputter, ExperimentParameters experimentParameters, string dataPath)
        {
            var engine = new InferenceEngine(new ExpectationPropagation())
            {
                ShowFactorGraph = false,
                ShowWarnings    = true,
                ShowProgress    = false
            };

            // Set engine flags
            engine.Compiler.WriteSourceFiles    = true;
            engine.Compiler.UseParallelForLoops = false;

            string labelsFileName     = Path.Combine(dataPath, "HarnessingTheCrowdLabels.tsv");
            string goldLabelsFileName = Path.Combine(dataPath, "HarnessingTheCrowdGoldLabels.tsv");
            string textsFileName      = Path.Combine(dataPath, "HarnessingTheCrowdTexts.tsv");

            if (!File.Exists(labelsFileName) ||
                !File.Exists(goldLabelsFileName) ||
                !File.Exists(textsFileName))
            {
                throw new FileNotFoundException("Unfortunately, we were not able to ship the data necessary to run the code for this chapter.");
            }

            var crowdData = CrowdDataWithText.LoadData(
                labelsFileName,
                goldLabelsFileName,
                textsFileName,
                new HashSet <int>(LabelValuesToString.Keys));

            Rand.Restart(experimentParameters.RandomSeed);

            // Preparing the input data
            var split              = crowdData.SplitData(experimentParameters.FractionGoldLabelsReservedForTraining);
            var fullTrainingData   = split[CrowdData.Mode.Training];
            var fullValidationData = split[CrowdData.Mode.Validation];

            var trainingData = (CrowdDataWithText)fullTrainingData.LimitData(
                maxNumTweets: experimentParameters.UseOnlyTweetsWithGoldLabels
                    ? fullTrainingData.NumGoldTweets
                    : experimentParameters.NumberOfTrainingTweets,
                randomSeed: experimentParameters.RandomSeed);

            if (experimentParameters.UseBalancedTrainingSets)
            {
                trainingData = (CrowdDataWithText)fullTrainingData.LimitData(
                    maxNumTweets: experimentParameters.UseOnlyTweetsWithGoldLabels
                        ? fullTrainingData.NumGoldTweets
                        : experimentParameters.NumberOfTrainingTweets,
                    balanceTweetsByLabel: true,
                    randomSeed: experimentParameters.RandomSeed);
            }

            var validationData = (CrowdDataWithText)fullValidationData.LimitData(
                experimentParameters.NumberOfValidationJudgments,
                randomSeed: experimentParameters.RandomSeed);

            var validationDataWithNoWorkerLabels = (CrowdDataWithText)validationData.LimitData(maxNumWorkers: 0);

            var trainingWorkerMetrics   = GetWorkerMetrics(trainingData, null, experimentParameters.MaximumNumberWorkers);
            var validationWorkerMetrics =
                GetWorkerMetrics(validationData, null, experimentParameters.MaximumNumberWorkers);
            var corpus            = trainingData.TweetTexts.Values.Distinct().ToArray();
            var corpusInformation = CorpusInformation.BuildCorpusInformation(
                corpus,
                experimentParameters.VocabularyThreshold);

            var totalNumTrainingJudgments = trainingData.CrowdLabels.Count;
            var numTrainingJudgments      = Util.ArrayInit(
                experimentParameters.NumDataSizes,
                i => Math.Round(totalNumTrainingJudgments * (i + 1) / (double)experimentParameters.NumDataSizes));

            var trainingDataSets = Util.ArrayInit(
                experimentParameters.NumDataSizes,
                i => (CrowdDataWithText)trainingData.LimitData((int)numTrainingJudgments[i],
                                                               randomSeed: experimentParameters.RandomSeed));

            var trainingTweets         = trainingData.Tweets;
            var trainingCrowdWorkers   = trainingData.Workers;
            var validationTweets       = validationData.Tweets;
            var validationCrowdWorkers = validationData.Workers;

            var allDataInfo = new Dictionary <string, object>
            {
                ["Full training data"]           = fullTrainingData,
                ["Full validation data"]         = fullValidationData,
                ["Validation data"]              = validationData,
                ["Training data"]                = trainingData,
                ["Training data sets"]           = trainingDataSets,
                ["Validation data set"]          = validationData,
                ["Training set tweets"]          = trainingTweets,
                ["Training set crowd workers"]   = trainingCrowdWorkers,
                ["Validation set tweets"]        = validationTweets,
                ["Validation set crowd workers"] = validationCrowdWorkers,
                ["CorpusInformation"]            = corpusInformation
            };

            outputter.Out(allDataInfo, "Inputs");

            WriteCrowdDataDetailsToConsole(fullTrainingData, "Full training data");
            WriteCrowdDataDetailsToConsole(fullValidationData, "Full validation data");
            WriteCrowdDataDetailsToConsole(trainingData, "Training set");
            WriteCrowdDataDetailsToConsole(validationData, "Validation set");

            var now    = DateTime.Now;
            var nowStr = $"{now.Year:D4}{now.Month:D2}{now.Day:D2}T{now.Hour:D2}{now.Minute:D2}{now.Second:D2}";

            var experimentInfo = new Dictionary <string, object>
            {
                ["Date"]       = nowStr,
                ["Parameters"] = experimentParameters,
                [$"Training {WorkerMetricsKey}"]         = trainingWorkerMetrics,
                [$"Validation {WorkerMetricsKey}"]       = validationWorkerMetrics,
                [$"Training {LabelCountHistogramKey}"]   = GetWorkerLabelCountHistogram(trainingData),
                [$"Validation {LabelCountHistogramKey}"] = GetWorkerLabelCountHistogram(validationData)
            };

            outputter.Out(experimentInfo, "Experiment");

            // Data structures for comparing results
            var metricsForPlots = new List <Metric> {
                Metric.Accuracy, Metric.AverageLogProb
            };
            var metricsStripCharts = new Dictionary <string, Dictionary <string, PointWithBounds[]> >();
            var metricsBarCharts   = new Dictionary <string, Dictionary <string, double> >();

            foreach (var metric in metricsForPlots)
            {
                var metricString = metric.ToString();
                metricsStripCharts[metricString] = new Dictionary <string, PointWithBounds[]>();
                metricsBarCharts[metricString]   = new Dictionary <string, double>();
            }

            // Creates a snapshot of currently accumulated comparison metrics
            Dictionary <string, object> getCurrentComparisonSnapshot()
            {
                var metricsStripChartsSnapshot =
                    new Dictionary <string, Dictionary <string, PointWithBounds[]> >();

                var metricsBarChartsSnapshot =
                    new Dictionary <string, Dictionary <string, double> >();

                foreach (var metric in metricsForPlots)
                {
                    var metricString = metric.ToString();
                    metricsStripChartsSnapshot[metricString] = new Dictionary <string, PointWithBounds[]>(metricsStripCharts[metricString]);
                    metricsBarChartsSnapshot[metricString]   = new Dictionary <string, double>(metricsBarCharts[metricString]);
                }
                return(new Dictionary <string, object>
                {
                    ["Strip Charts"] = metricsStripChartsSnapshot,
                    ["Bar Charts"] = metricsBarChartsSnapshot
                });
            }

            // Running models as specified in experiment parameters
            bool section2Started = false;
            Dictionary <string, object> section2Comparison = null;

            if ((experimentParameters.ModelTypes & ModelTypes.MajorityVote) != 0)
            {
                Console.WriteLine($"\n{Contents.S2TryingOutTheWorkerModel.NumberedName}\n");
                section2Started = true;
                var accuracyString      = Metric.Accuracy.ToString();
                var majorityVoteString  = "Majority Vote";
                var majorityVoteMetrics = RunMajorityVoteModel(validationData, majorityVoteString);
                outputter.Out(majorityVoteMetrics, Contents.S2TryingOutTheWorkerModel.NumberedName, majorityVoteString);

                metricsStripCharts[accuracyString][majorityVoteString] = GetChartPointsForMetric(
                    Enumerable.Repeat(majorityVoteMetrics, trainingDataSets.Length).ToList(),
                    Metric.Accuracy.ToString(),
                    numTrainingJudgments);

                metricsBarCharts[accuracyString][majorityVoteString] =
                    metricsStripCharts[accuracyString][majorityVoteString].Last().Y;

                section2Comparison = getCurrentComparisonSnapshot();
                outputter.Out(section2Comparison, Contents.S2TryingOutTheWorkerModel.NumberedName, "Comparison");
            }

            if ((experimentParameters.ModelTypes & ModelTypes.HonestWorker) != 0)
            {
                if (!section2Started)
                {
                    Console.WriteLine($"\n{Contents.S2TryingOutTheWorkerModel.NumberedName}\n");
                }
                var currentModel        = new HonestWorkerModel(engine);
                var honestWorkerMetrics = new Dictionary <string, Dictionary <string, object> >();
                outputter.Out(honestWorkerMetrics, Contents.S2TryingOutTheWorkerModel.NumberedName, currentModel.Name);

                honestWorkerMetrics = RunSweep(
                    trainingDataSets,
                    validationData,
                    currentModel,
                    corpusInformation,
                    (map, model, runner) => new HonestWorkerRunner(map, (HonestWorkerModel)model, runner),
                    GetHonestWorkerTrainingResults,
                    (runner, metrics) =>
                    GetHonestWorkerValidationResults(runner, metrics, experimentParameters.MaximumNumberWorkers),
                    experimentParameters,
                    resultStorage: honestWorkerMetrics).Results;


                foreach (var metric in metricsForPlots)
                {
                    metricsStripCharts[metric.ToString()][currentModel.Name] =
                        GetChartPointsForMetric(honestWorkerMetrics, metric, numTrainingJudgments);
                    metricsBarCharts[metric.ToString()][currentModel.Name] =
                        metricsStripCharts[metric.ToString()][currentModel.Name].Last().Y;
                }

                section2Comparison = getCurrentComparisonSnapshot();
                outputter.Out(section2Comparison, Contents.S2TryingOutTheWorkerModel.NumberedName, "Comparison");
            }

            if ((experimentParameters.ModelTypes & ModelTypes.BiasedWorker) != 0)
            {
                Console.WriteLine($"\n{Contents.S3CorrectingForWorkerBiases.NumberedName}\n");
                var currentModel        = new BiasedWorkerModel(engine);
                var biasedWorkerMetrics = new Dictionary <string, Dictionary <string, object> >();
                outputter.Out(biasedWorkerMetrics, Contents.S3CorrectingForWorkerBiases.NumberedName, currentModel.Name);

                biasedWorkerMetrics = RunSweep(
                    trainingDataSets,
                    validationData,
                    currentModel,
                    corpusInformation,
                    (map, model, runner) => new BiasedWorkerModelRunner(map, (BiasedWorkerModel)model, runner),
                    runner => GetBiasedWorkerTrainingResults(runner, experimentParameters.MaximumNumberWorkers),
                    GetValidationResults,
                    experimentParameters,
                    resultStorage: biasedWorkerMetrics).Results;

                foreach (var metric in metricsForPlots)
                {
                    metricsStripCharts[metric.ToString()][currentModel.Name] =
                        GetChartPointsForMetric(biasedWorkerMetrics, metric, numTrainingJudgments);
                    metricsBarCharts[metric.ToString()][currentModel.Name] =
                        metricsStripCharts[metric.ToString()][currentModel.Name].Last().Y;
                }

                outputter.Out(getCurrentComparisonSnapshot(), Contents.S3CorrectingForWorkerBiases.NumberedName, "Comparison");
            }

            if ((experimentParameters.ModelTypes & ModelTypes.BiasedCommunity) != 0)
            {
                Console.WriteLine($"\n{Contents.S4CommunitiesOfWorkers.NumberedName}\n");
                engine.Algorithm = new VariationalMessagePassing();
                foreach (int numCommunities in experimentParameters.NumberOfCommunitiesSweep)
                {
                    var currentModel = new BiasedCommunityModel(engine)
                    {
                        NumberOfCommunities = numCommunities
                    };
                    var result = new Dictionary <string, Dictionary <string, object> >();
                    outputter.Out(result, Contents.S4CommunitiesOfWorkers.NumberedName, currentModel.Name);

                    result = RunSweep(
                        trainingDataSets,
                        validationData,
                        currentModel,
                        corpusInformation,
                        (map, model, runner) => new BiasedCommunityModelRunner(
                            map,
                            (BiasedCommunityModel)model,
                            runner),
                        GetBiasedCommunityTrainingResults,
                        GetValidationResults,
                        experimentParameters,
                        resultStorage: result).Results;

                    foreach (var metric in metricsForPlots)
                    {
                        metricsStripCharts[metric.ToString()][currentModel.Name] =
                            GetChartPointsForMetric(result, metric, numTrainingJudgments);
                        metricsBarCharts[metric.ToString()][currentModel.Name] =
                            metricsStripCharts[metric.ToString()][currentModel.Name].Last().Y;
                    }
                }

                outputter.Out(getCurrentComparisonSnapshot(), Contents.S4CommunitiesOfWorkers.NumberedName, "Comparison");
            }

            if ((experimentParameters.ModelTypes & ModelTypes.BiasedCommunityWords) != 0)
            {
                Console.WriteLine($"\n{Contents.S5MakingUseOfTheTweets.NumberedName}\n");
                // VMP is an order of magnitude faster than EP here, while producing almost the same result
                engine.Algorithm = new VariationalMessagePassing();
                foreach (int numCommunities in experimentParameters.NumberOfCommunitiesSweep)
                {
                    var currentModel = new BiasedCommunityWordsModel(engine)
                    {
                        NumberOfCommunities = numCommunities
                    };
                    var result = new Dictionary <string, Dictionary <string, object> >();
                    outputter.Out(result, Contents.S5MakingUseOfTheTweets.NumberedName, currentModel.Name);

                    result = RunSweep(
                        trainingDataSets,
                        validationData,
                        currentModel,
                        corpusInformation,
                        (map, model, runner) => new BiasedCommunityWordsRunner(
                            (CrowdDataWithTextMapping)map,
                            (BiasedCommunityWordsModel)model,
                            runner),
                        GetBiasedCommunityWordsRunnerResults,
                        GetValidationResults,
                        experimentParameters,
                        validationDataWithNoWorkerLabels,
                        null,
                        50,
                        resultStorage: result).Results;

                    foreach (var metric in metricsForPlots)
                    {
                        metricsStripCharts[metric.ToString()][currentModel.Name] =
                            GetChartPointsForMetric(result, metric, numTrainingJudgments);
                        metricsBarCharts[metric.ToString()][currentModel.Name] =
                            metricsStripCharts[metric.ToString()][currentModel.Name].Last().Y;
                    }
                }

                outputter.Out(getCurrentComparisonSnapshot(), Contents.S5MakingUseOfTheTweets.NumberedName, "Comparison");
            }

            Console.WriteLine("\nCompleted all experiments.");
        }
コード例 #2
0
 /// <summary>
 /// Initializes a new instance of the <see cref="HonestWorkerRunner"/> class.
 /// </summary>
 /// <param name="dataMapping">
 /// The data mapping.
 /// </param>
 /// <param name="model">
 /// The model.
 /// </param>
 /// <param name="trainingRunner">
 /// The training runner.
 /// </param>
 public HonestWorkerRunner(CrowdDataMapping dataMapping, HonestWorkerModel model, ModelRunnerBase trainingRunner = null)
     : base(dataMapping, model, trainingRunner)
 {
 }