private void backgroundWorker_DoWork(object sender, System.ComponentModel.DoWorkEventArgs e)
{
BioSeqTask task = AppConfigHelper.TaskOfID(AppConfigHelper.LastTaskID);
WSLProxyResponse WSLResponse = null;
switch (task.TaskType)
{
case "Centrifuge":
WSLResponse = ServiceCallHelper.Centrifuge(AppConfigHelper.LoggedOnUser, AppConfigHelper.JsonConfig());
break;
case "Salmonella":
WSLResponse = ServiceCallHelper.Salmonella(AppConfigHelper.LoggedOnUser, AppConfigHelper.JsonConfig());
break;
case "VFabricate":
WSLResponse = ServiceCallHelper.VFabricate(AppConfigHelper.LoggedOnUser, AppConfigHelper.JsonConfig());
break;
case "Search":
WSLResponse = ServiceCallHelper.SearchSample(AppConfigHelper.LoggedOnUser, AppConfigHelper.JsonConfig());
break;
case "Kraken2":
WSLResponse = ServiceCallHelper.Kraken2(AppConfigHelper.LoggedOnUser, AppConfigHelper.JsonConfig());
break;
case "Quast":
WSLResponse = ServiceCallHelper.Quast(AppConfigHelper.LoggedOnUser, AppConfigHelper.JsonConfig());
break;
case "BBMap":
WSLResponse = ServiceCallHelper.BBMap(AppConfigHelper.LoggedOnUser, AppConfigHelper.JsonConfig());
break;
case "BuildTree":
WSLResponse = ServiceCallHelper.BuildTree(AppConfigHelper.LoggedOnUser, AppConfigHelper.JsonConfig());
break;
case "Assemble":
WSLResponse = ServiceCallHelper.Assemble(AppConfigHelper.LoggedOnUser, AppConfigHelper.JsonConfig(), AppConfigHelper.QuerySampleConfig());
break;
case "InfluenzaA":
WSLResponse = ServiceCallHelper.InfluenzaA(AppConfigHelper.LoggedOnUser, AppConfigHelper.JsonConfig());
break;
case "Nextstrain":
WSLResponse = ServiceCallHelper.Nextstrain(AppConfigHelper.LoggedOnUser, AppConfigHelper.JsonConfig());
break;
}
task.LastError = WSLResponse.StandardError;
task.StandardOutput = WSLResponse.StandardOutput;
e.Result = new List <object>()
{
WSLResponse.ExitCode, task
};
}
