public String GetElementTypeLongName(Taxon taxon)
{
string longrank = LongName;
if (taxon.AvailableName.GetValueOrDefault(false))
{
longrank += " Available Name";
}
else if (taxon.LiteratureName.GetValueOrDefault(false))
{
longrank += " Literature Name";
}
return(longrank);
}
public void TestAddTaxa()
{
// First find a root to start from...
var parent = Service.GetTaxon(7009); // Insecta
Assert.NotNull(parent);
// Create a new family...
var taxon = new Taxon { TaxaParentID = parent.TaxaID, Author = "Smith", YearOfPub = "1990", AvailableName = false, ChgComb = false, Epithet = "Test Taxa", ElemType = "F", KingdomCode = "A", Unplaced = false, Unverified = false, LiteratureName = false, Order = 0 };
// insert it...
Service.InsertTaxon(taxon);
Assert.IsTrue(taxon.TaxaID.HasValue);
Trace("Inserted TaxaID: {0}", taxon.TaxaID);
var other = Service.GetTaxon(taxon.TaxaID.Value);
AssertObjectsEqual(other, taxon, "Rank", "NameStatus", "Parentage", "Shadowed", "RankLong", "KingdomLong", "RankCategory", "DateCreated", "WhoCreated", "DateModified", "WhoModified", "GUID", "ObjectID");
}
protected Func<MapPointSet> TaxonPointFunctionFactory(Taxon t)
{
return () => {
return ExtractSpecimenPointSet(t);
};
}
protected MapPointSet ExtractSpecimenPointSet(Taxon t)
{
var data = Service.GetMaterialForTaxon(t.TaxaID.Value);
var set = new MatrixMapPointSet(t.TaxaFullName, data, null);
return set;
}
internal MapPointSet GenerateSpecimenPoints(bool showOptions, Taxon taxon)
{
if (showOptions) {
var frm = new PointSetOptionsWindow(taxon.TaxaFullName, TaxonPointFunctionFactory(taxon));
frm.Owner = this.FindParentWindow();
if (frm.ShowDialog() == true) {
return frm.Points;
}
} else {
return ExtractSpecimenPointSet(taxon);
}
return null;
}
internal void AddNewTaxonAllRanks(TaxonViewModel parent)
{
var frm = new SelectRankWindow();
frm.Owner = this.FindParentWindow();
frm.WindowStartupLocation = WindowStartupLocation.CenterScreen;
if (frm.ShowDialog() == true) {
var rank = frm.SelectedRank;
if (rank != null) {
var t = new Taxon() { TaxaID = GetNewTaxonID(), TaxaParentID = 0, Rank = rank.Code, ElemType = rank.Code, KingdomCode = rank.KingdomCode };
TaxonViewModel viewModel = new TaxonViewModel(parent, t, GenerateTaxonDisplayLabel);
viewModel.Author = "";
viewModel.YearOfPub = "";
viewModel.Epithet = "";
parent.IsExpanded = true;
try {
parent.Children.Add(viewModel);
// Move to the top of the list, until it is saved...
parent.Children.Move(parent.Children.IndexOf(viewModel), 0);
viewModel.IsSelected = true;
RenameTaxon(viewModel);
RegisterPendingChange(new InsertTaxonDatabaseCommand(viewModel), this);
} catch (Exception ex) {
ErrorMessage.Show(ex.Message);
}
}
}
}
internal TaxonViewModel AddNewTaxon(TaxonViewModel parent, string elemType, TaxonViewModelAction action, bool startRename = true, bool select = true)
{
// TODO: check permissions...
Taxon t = new Taxon();
t.TaxaParentID = parent.TaxaID.Value;
t.TaxaID = GetNewTaxonID();
TaxonViewModel viewModel = new TaxonViewModel(parent, t, GenerateTaxonDisplayLabel);
viewModel.ElemType = elemType;
viewModel.KingdomCode = parent.KingdomCode;
viewModel.Author = "";
viewModel.YearOfPub = "";
viewModel.Epithet = "";
parent.IsExpanded = true;
try {
if (action != null) {
action(viewModel);
}
parent.Children.Add(viewModel);
// Move to the top of the list, until it is saved...
parent.Children.Move(parent.Children.IndexOf(viewModel), 0);
if (select) {
viewModel.IsSelected = true;
}
if (startRename) {
RenameTaxon(viewModel);
}
RegisterPendingChange(new InsertTaxonDatabaseCommand(viewModel), this);
} catch (Exception ex) {
ErrorMessage.Show(ex.Message);
}
return viewModel;
}
private void AddMaterialRowsForTaxon(DataMatrix results, Taxon taxon)
{
var ids = XMLIOService.GetMaterialForTaxon(taxon.TaxaID.Value);
foreach (XMLIOMaterialID id in ids) {
var links = SupportService.GetMultimediaItems(TraitCategoryType.Material.ToString(), id.MaterialID);
foreach (MultimediaLink link in links) {
AddTaxonRow(results, taxon, link, "Material", id.MaterialID);
}
}
}
private void AddTaxonRow(DataMatrix results, Taxon taxa, MultimediaLink link, string multimediaSource = "Taxon", int? materialId= null)
{
// Filter the rows...
bool addRow = true;
if (!string.IsNullOrWhiteSpace(_extensionFilter)) {
addRow = _extensionFilter.Equals(link.Extension, StringComparison.CurrentCultureIgnoreCase);
}
if (addRow && !string.IsNullOrWhiteSpace(_typeFilter)) {
addRow = _typeFilter.Equals(link.MultimediaType, StringComparison.CurrentCultureIgnoreCase);
}
if (addRow) {
var row = results.AddRow();
row[0] = link.MultimediaID;
row[1] = taxa.TaxaID.Value;
row[2] = link;
row[3] = taxa.TaxaFullName;
row[4] = taxa.Rank;
row[5] = link.Name;
row[6] = link.Extension;
row[7] = link.MultimediaType;
row[8] = link.SizeInBytes;
row[9] = multimediaSource;
row[10] = materialId;
}
}
public void UpdateTaxon(Taxon taxon)
{
StoredProcUpdate("spBiotaUpdate",
_P("intBiotaID", taxon.TaxaID),
_P("vchrEpithet", taxon.Epithet, ""),
_P("vchrAuthor", taxon.Author, ""),
_P("vchrYearOfPub", taxon.YearOfPub, ""),
_P("bitChgComb", taxon.ChgComb, 0),
_P("chrElemType", taxon.ElemType, ""),
_P("bitUnplaced", taxon.Unplaced, 0),
_P("bitUnverified", taxon.Unverified, 0),
_P("vchrRank", taxon.Rank, ""),
_P("intOrder", taxon.Order, 0),
_P("chrKingdomCode", taxon.KingdomCode, "A"),
_P("bitAvailableName", taxon.AvailableName, ""),
_P("bitLiteratureName", taxon.LiteratureName, ""),
_P("vchrAvailableNameStatus", taxon.NameStatus, ""));
}
public DataValidationResult ValidateTaxonMove(Taxon source, Taxon dest)
{
var map = GetTaxonRankMap();
// Can only really validate if the ranks of the source and target are 'known'
if (map.ContainsKey(RankKey(dest)) && map.ContainsKey(RankKey(source))) {
TaxonRank destrank = map[RankKey(dest)];
TaxonRank srcrank = map[RankKey(source)];
if (!IsValidChild(srcrank, destrank)) {
return new DataValidationResult(false, String.Format("{0} is not a valid child of {1}", srcrank.LongName, destrank.LongName));
}
}
return new DataValidationResult(true);
}
public void InsertTaxon(Taxon taxon)
{
var retval = ReturnParam("newTaxonId");
StoredProcUpdate("spBiotaInsert",
_P("intParentID", taxon.TaxaParentID),
_P("vchrEpithet", taxon.Epithet),
_P("vchrAuthor", taxon.Author, ""),
_P("vchrYearOfPub", taxon.YearOfPub, ""),
_P("bitChgComb", taxon.ChgComb, 0),
_P("chrElemType", taxon.ElemType, ""),
_P("bitUnplaced", taxon.Unplaced, 0),
_P("vchrRank", taxon.Rank, ""),
_P("intOrder", taxon.Order, 0),
_P("bitUnverified", taxon.Unverified, 0),
_P("chrKingdomCode", taxon.KingdomCode, "A"),
_P("bitAvailableName", taxon.AvailableName, 0),
_P("bitLiteratureName", taxon.LiteratureName, ""),
_P("vchrAvailableNameStatus", taxon.NameStatus, ""),
retval);
if (retval.Value != null) {
taxon.TaxaID = (Int32) retval.Value;
}
}
public TaxonRank GetTaxonRank(Taxon taxon)
{
// If there is no kingdom code, assume Animalia
var kingdomCode = taxon.KingdomCode;
if (String.IsNullOrEmpty(kingdomCode)) {
kingdomCode = "A";
}
return GetTaxonRank(taxon.ElemType, kingdomCode);
}
private string RankKey(Taxon taxon)
{
return RankKey(taxon.KingdomCode == null ? "A" : taxon.KingdomCode, taxon.ElemType);
}
public TaxonViewModel(HierarchicalViewModelBase parent, Taxon taxon, TaxonLabelGenerator labelGenerator, bool isRoot = false)
: base()
{
this.Parent = parent;
this.Taxon = taxon;
this.IsChanged = false;
this.DataChanged += new DataChangedHandler(TaxonViewModel_DataChanged);
_labelGenerator = labelGenerator;
this.IsRootNode = isRoot;
TaxonLabel = GenerateLabel();
}
public String GetElementTypeLongName(Taxon taxon)
{
string longrank = LongName;
if (taxon.AvailableName.GetValueOrDefault(false)) {
longrank += " Available Name";
} else if (taxon.LiteratureName.GetValueOrDefault(false)) {
longrank += " Literature Name";
}
return longrank;
}
public UpdateTaxonCommand(Taxon taxon)
{
this.Taxon = taxon;
_isNew = taxon.TaxaID.Value < 0;
}
public ObservableCollection<HierarchicalViewModelBase> LoadTaxonViewModel()
{
using (new OverrideCursor(Cursors.Wait)) {
List<Taxon> taxa = Service.GetTopLevelTaxa();
Taxon root = new Taxon();
root.TaxaID = 0;
root.TaxaParentID = -1;
root.Epithet = _R("TaxonExplorer.explorer.root");
TaxonViewModel rootNode = new TaxonViewModel(null, root, GenerateTaxonDisplayLabel, true);
taxa.ForEach((taxon) => {
TaxonViewModel item = new TaxonViewModel(rootNode, taxon, GenerateTaxonDisplayLabel);
if (item.NumChildren > 0) {
item.LazyLoadChildren += new HierarchicalViewModelAction(item_LazyLoadChildren);
item.Children.Add(new ViewModelPlaceholder(_R("TaxonExplorer.explorer.loading", item.Epithet)));
}
rootNode.Children.Add(item);
});
ObservableCollection<HierarchicalViewModelBase> model = new ObservableCollection<HierarchicalViewModelBase>();
model.Add(rootNode);
rootNode.IsExpanded = true;
return model;
}
}
public UpdateBiotaPermissions(int groupId, int userId, PERMISSION_MASK mask, Taxon taxon)
{
this.GroupID = groupId;
this.UserID = userId;
this.Mask = mask;
this.Taxon = taxon;
}
public TaxonReferencesReport(User user, Taxon taxon)
: base(user)
{
Taxon = taxon;
}
