private static Model CreateModel()
{
IList <IList <Node> > nodeBoundaries;
IList <IList <Element> > elementBoundaries;
double density = 1.0;
double c = 1.0;
double k = 1.0;
double[] U = { 1.0, 1, 1 };
double h = .0;
var elementFactory3D = new ConvectionDiffusionElement3DFactory(new ConvectionDiffusionMaterial(k, U, 0));
var boundaryFactory3D = new SurfaceBoundaryFactory3D(0, new ConvectionDiffusionMaterial(k, U, 0));
var model = new Model();
model.SubdomainsDictionary[0] = new Subdomain(0);
elementBoundaries = new List <IList <Element> >();
nodeBoundaries = new List <IList <Node> >();
for (int i = 0; i < 10; i++)
{
elementBoundaries.Add(new List <Element>());
nodeBoundaries.Add(new List <Node>());
}
double[,] nodeData = new double[, ]
{
{ 0, 0, 0 }, { 0, .1, 0 }, { 0, .1, .1 }, { 0, 0, .1 }, { .1, 0, 0 }, { .1, .1, 0 }, { .1, .1, .1 }, { .1, 0, .1 },
{ 0, 0.05, 0 }, { 0, 0, 0.05 }, { .05, 0, 0 }, { 0, .1, 0.05 }, { .05, .1, 0 }, { 0, 0.05, .1 }, { .05, .1, .1 },
{ .05, 0, .1 }, { .1, 0.05, 0 }, { .1, 0, 0.05 }, { .1, .1, 0.05 }, { .1, 0.05, .1 }, { 0, 0.05, 0.05 },
{ .05, 0.05, 0 }, { .05, 0, 0.05 }, { .05, .1, 0.05 }, { .05, 0.05, .1 }, { .1, 0.05, 0.05 },
{ .05, 0.05, 0.05 },
};
for (int nNode = 0; nNode < nodeData.GetLength(0); nNode++)
{
model.NodesDictionary.Add(nNode, new Node(id: nNode, x: nodeData[nNode, 0], y: nodeData[nNode, 1], z: nodeData[nNode, 2]));
}
IReadOnlyList <Node> nodes = new List <Node>
{
model.NodesDictionary[0], model.NodesDictionary[1], model.NodesDictionary[2],
model.NodesDictionary[3], model.NodesDictionary[4], model.NodesDictionary[5],
model.NodesDictionary[6], model.NodesDictionary[7], model.NodesDictionary[8],
model.NodesDictionary[9], model.NodesDictionary[10], model.NodesDictionary[11],
model.NodesDictionary[12], model.NodesDictionary[13], model.NodesDictionary[14],
model.NodesDictionary[15], model.NodesDictionary[16], model.NodesDictionary[17],
model.NodesDictionary[18], model.NodesDictionary[19], model.NodesDictionary[20],
model.NodesDictionary[21], model.NodesDictionary[22], model.NodesDictionary[23],
model.NodesDictionary[24], model.NodesDictionary[25], model.NodesDictionary[26],
};
IList <IReadOnlyList <Node> > face = new List <IReadOnlyList <Node> >();
//face = new List<IReadOnlyList<Node>>();
for (int i = 0; i < 6; i++)
{
face.Add(new List <Node>());
}
face[0] = new List <Node>
{
model.NodesDictionary[0],
model.NodesDictionary[1],
model.NodesDictionary[2],
model.NodesDictionary[3],
model.NodesDictionary[4],
model.NodesDictionary[5],
model.NodesDictionary[6],
model.NodesDictionary[7],
model.NodesDictionary[8],
};
face[1] = new List <Node>
{
model.NodesDictionary[0],
model.NodesDictionary[1],
model.NodesDictionary[2],
model.NodesDictionary[9],
model.NodesDictionary[10],
model.NodesDictionary[11],
model.NodesDictionary[18],
model.NodesDictionary[19],
model.NodesDictionary[20],
};
face[2] = new List <Node>
{
model.NodesDictionary[18],
model.NodesDictionary[19],
model.NodesDictionary[20],
model.NodesDictionary[21],
model.NodesDictionary[22],
model.NodesDictionary[23],
model.NodesDictionary[24],
model.NodesDictionary[25],
model.NodesDictionary[26],
};
face[3] = new List <Node>
{
model.NodesDictionary[6],
model.NodesDictionary[7],
model.NodesDictionary[8],
model.NodesDictionary[15],
model.NodesDictionary[16],
model.NodesDictionary[17],
model.NodesDictionary[24],
model.NodesDictionary[25],
model.NodesDictionary[26],
};
face[4] = new List <Node>
{
model.NodesDictionary[0],
model.NodesDictionary[3],
model.NodesDictionary[6],
model.NodesDictionary[9],
model.NodesDictionary[12],
model.NodesDictionary[15],
model.NodesDictionary[18],
model.NodesDictionary[21],
model.NodesDictionary[24],
};
face[5] = new List <Node>
{
model.NodesDictionary[2],
model.NodesDictionary[5],
model.NodesDictionary[8],
model.NodesDictionary[11],
model.NodesDictionary[14],
model.NodesDictionary[17],
model.NodesDictionary[20],
model.NodesDictionary[23],
model.NodesDictionary[26],
};
var Hexa27 = elementFactory3D.CreateElement(CellType.Hexa27, nodes);
var element = new Element();
element.ID = 0;
element.ElementType = Hexa27;
foreach (Node node in nodes)
{
element.AddNode(node);
}
model.SubdomainsDictionary[0].Elements.Add(element);
model.ElementsDictionary.Add(0, element);
for (int i = 1; i < 7; i++)
{
var Quad = boundaryFactory3D.CreateElement(CellType.Quad9, face[i - 1]);
var faceElement = new Element();
faceElement.ID = i;
faceElement.ElementType = Quad;
foreach (Node node in face[i - 1])
{
faceElement.AddNode(node);
}
model.SubdomainsDictionary[0].Elements.Add(faceElement);
model.ElementsDictionary.Add(i, faceElement);
}
//constraints
foreach (int i in new int[] { 2, 6, 7 })
{
model.NodesDictionary[i].Constraints.Add(new Constraint()
{
Amount = 0,
DOF = ThermalDof.Temperature
});
}
// fortish korufhs
Load load1;
foreach (int i in new int[] { 0, 1, 3, 4, 5 })
{
load1 = new Load()
{
Node = model.NodesDictionary[i],
DOF = ThermalDof.Temperature,
Amount = 100
};
model.Loads.Add(load1);
}
return(model);
}
private static Tuple <Model, ComsolMeshReader2> CreateModel(double k, double[] U, double L)
{
string filename = Path.Combine(Directory.GetCurrentDirectory(), "InputFiles", "TumorGrowthModel", "mesh.mphtxt");
ComsolMeshReader2 modelReader = new ComsolMeshReader2(filename, k, U, L);
Model model = modelReader.CreateModelFromFile();
//Boundary Conditions
var flux1 = new FluxLoad(6.9e08);
var flux2 = new FluxLoad(10);
var dir1 = new DirichletDistribution(list => {
return(Vector.CreateWithValue(list.Count, 1));
});
var dir2 = new DirichletDistribution(list => {
return(Vector.CreateWithValue(list.Count, 0));
});
var weakDirichlet1 = new WeakDirichlet(dir1, k);
var weakDirichlet2 = new WeakDirichlet(dir2, k);
var dirichletFactory1 = new SurfaceLoadElementFactory(weakDirichlet1);
var dirichletFactory2 = new SurfaceLoadElementFactory(weakDirichlet2);
var fluxFactory1 = new SurfaceLoadElementFactory(flux1);
var fluxFactory2 = new SurfaceLoadElementFactory(flux2);
var boundaryFactory3D = new SurfaceBoundaryFactory3D(0,
new ConvectionDiffusionMaterial(k, new double[] { 0, 0, 0 }, 0));
int[] boundaryIDs = new int[] { 0, 1, 2 };
//int numberOfQuadElements = 0;
//for ( int i = 0; i<boundaryIDs.Length; i++)
//{
// numberOfQuadElements += modelReader.quadBoundaries[boundaryIDs[i]].Count;
//}
int TriID = model.ElementsDictionary.Count + 1;
foreach (int boundaryID in boundaryIDs)
{
foreach (IReadOnlyList <Node> nodes in modelReader.triBoundaries[boundaryID])
{
//var fluxElement1 = fluxFactory1.CreateElement(CellType.Tri3, nodes);
//model.SurfaceLoads.Add(fluxElement1);
var dirichletElement1 = dirichletFactory1.CreateElement(CellType.Tri3, nodes);
model.SurfaceLoads.Add(dirichletElement1);
var SurfaceBoundaryElement = boundaryFactory3D.CreateElement(CellType.Tri3, nodes);
var element = new Element();
element.ID = TriID;
element.ElementType = SurfaceBoundaryElement;
model.SubdomainsDictionary[0].Elements.Add(element);
model.ElementsDictionary.Add(TriID, element);
foreach (Node node in nodes)
{
element.AddNode(node);
}
TriID += 1;
// var surfaceElement = new SurfaceLoadElement();
//element.ID = TriID;
//surfaceElement.ElementType = DirichletElement1;
//model.SubdomainsDictionary[0].Elements.Add(dirichletElement1);
//model.ElementsDictionary.Add(TriID, surfaceElement);
//model.NodesDictionary[surfaceElement.ID].Constraints.Add(new Constraint() { DOF = ThermalDof.Temperature, Amount = 100 });
}
}
boundaryIDs = new int[] { 5 };
foreach (int boundaryID in boundaryIDs)
{
foreach (IReadOnlyList <Node> nodes in modelReader.quadBoundaries[boundaryID])
{
// //IReadOnlyList<Node> nodes = (IReadOnlyList<Node>)element.Nodes;
// //var fluxElement1 = fluxFactory1.CreateElement(CellType.Quad4, nodes);
// //model.SurfaceLoads.Add(fluxElement1);
var dirichletElement2 = dirichletFactory2.CreateElement(CellType.Quad4, nodes);
model.SurfaceLoads.Add(dirichletElement2);
var SurfaceBoundaryElement = boundaryFactory3D.CreateElement(CellType.Quad4, nodes);
var element = new Element();
element.ID = TriID;
element.ElementType = SurfaceBoundaryElement;
model.SubdomainsDictionary[0].Elements.Add(element);
model.ElementsDictionary.Add(TriID, element);
foreach (Node node in nodes)
{
element.AddNode(node);
}
TriID += 1;
// // var surfaceElement = new SurfaceLoadElement();
// //element.ID = TriID;
// //surfaceElement.ElementType = DirichletElement1;
// //model.SubdomainsDictionary[0].Elements.Add(dirichletElement1);
// //model.ElementsDictionary.Add(TriID, surfaceElement);
// //model.NodesDictionary[surfaceElement.ID].Constraints.Add(new Constraint() { DOF = ThermalDof.Temperature, Amount = 100 });
}
}
//boundaryIDs = new int[] { 1, 2, 3, 4 };
//foreach (int boundaryID in boundaryIDs)
//{
// foreach (Element element in modelReader.elementBoundaries[boundaryID])
// {
// IReadOnlyList<Node> nodes = (IReadOnlyList<Node>)element.Nodes;
// var fluxElement = fluxFactory.CreateElement(CellType.Quad4, nodes);
// model.SurfaceLoads.Add(fluxElement);
// }
//}
return(new Tuple <Model, ComsolMeshReader2>(model, modelReader));
}
private static Tuple <Model, ComsolMeshReader2> CreateModel(double k, double[] U, double L, double b1, double b2, double f1, double f2, double[] bl)
{
string filename = Path.Combine(Directory.GetCurrentDirectory(), "InputFiles", "TumorGrowthModel", "9hexa.mphtxt");
ComsolMeshReader2 modelReader = new ComsolMeshReader2(filename, k, U, L);
Model model = modelReader.CreateModelFromFile();
//Boundary Conditions
var flux1 = new FluxLoad(f1);
var flux2 = new FluxLoad(f2);
var dir1 = new DirichletDistribution(list => {
return(Vector.CreateWithValue(list.Count, b1));
});
var dir2 = new DirichletDistribution(list => {
return(Vector.CreateWithValue(list.Count, b2));
});
var weakDirichlet1 = new WeakDirichlet(dir1, k);
var weakDirichlet2 = new WeakDirichlet(dir2, k);
var dirichletFactory1 = new SurfaceLoadElementFactory(weakDirichlet1);
var dirichletFactory2 = new SurfaceLoadElementFactory(weakDirichlet2);
var fluxFactory1 = new SurfaceLoadElementFactory(flux1);
var fluxFactory2 = new SurfaceLoadElementFactory(flux2);
var boundaryFactory3D = new SurfaceBoundaryFactory3D(0,
new ConvectionDiffusionMaterial(k, new double[] { 0, 0, 0 }, 0));
foreach (Node node in model.Nodes)
{
model.Loads.Add(new Load()
{
Amount = bl[node.ID], Node = node, DOF = ThermalDof.Temperature
});
}
int[] boundaryIDs = new int[] { 0, };
int QuadID = model.ElementsDictionary.Count + 1;
foreach (int boundaryID in boundaryIDs)
{
foreach (IReadOnlyList <Node> nodes in modelReader.quadBoundaries[boundaryID])
{
var fluxElement1 = fluxFactory1.CreateElement(CellType.Quad4, nodes);
model.SurfaceLoads.Add(fluxElement1);
var dirichletElement1 = dirichletFactory1.CreateElement(CellType.Quad4, nodes);
model.SurfaceLoads.Add(dirichletElement1);
var SurfaceBoundaryElement = boundaryFactory3D.CreateElement(CellType.Quad4, nodes);
var element = new Element();
element.ID = QuadID;
element.ElementType = SurfaceBoundaryElement;
model.SubdomainsDictionary[0].Elements.Add(element);
model.ElementsDictionary.Add(QuadID, element);
foreach (Node node in nodes)
{
element.AddNode(node);
}
QuadID += 1;
}
}
boundaryIDs = new int[] { 5 };
foreach (int boundaryID in boundaryIDs)
{
foreach (IReadOnlyList <Node> nodes in modelReader.quadBoundaries[boundaryID])
{
var fluxElement1 = fluxFactory1.CreateElement(CellType.Quad4, nodes);
model.SurfaceLoads.Add(fluxElement1);
var dirichletElement2 = dirichletFactory2.CreateElement(CellType.Quad4, nodes);
model.SurfaceLoads.Add(dirichletElement2);
var SurfaceBoundaryElement = boundaryFactory3D.CreateElement(CellType.Quad4, nodes);
var element = new Element();
element.ID = QuadID;
element.ElementType = SurfaceBoundaryElement;
model.SubdomainsDictionary[0].Elements.Add(element);
model.ElementsDictionary.Add(QuadID, element);
foreach (Node node in nodes)
{
element.AddNode(node);
}
QuadID += 1;
}
}
return(new Tuple <Model, ComsolMeshReader2>(model, modelReader));
}
private static Tuple <Model, IModelReader> CreateConvectionDiffusionModel2(double k, double[] U, double L, double b, double f, double[] bl)
{
string filename = Path.Combine(Directory.GetCurrentDirectory(), "InputFiles", "TumorGrowthModel", "9hexa.mphtxt");
var modelReader = new ComsolMeshReader2(filename, k, U, L);
Model model = modelReader.CreateModelFromFile();
var material = new ConvectionDiffusionMaterial(k, U, L);
//Boundary Conditions
var flux1 = new FluxLoad(f);
var dir1 = new DirichletDistribution(list => {
return(Vector.CreateWithValue(list.Count, b));
});
//var dir2 = new DirichletDistribution(list =>
//{
// return Vector.CreateWithValue(list.Count, b2);
//});
var weakDirichlet1 = new WeakDirichlet(dir1, k);
//var weakDirichlet2 = new WeakDirichlet(dir2, k);
var dirichletFactory1 = new SurfaceLoadElementFactory(weakDirichlet1);
//var dirichletFactory2 = new SurfaceLoadElementFactory(weakDirichlet2);
var fluxFactory1 = new SurfaceLoadElementFactory(flux1);
var boundaryFactory3D = new SurfaceBoundaryFactory3D(0,
new ConvectionDiffusionMaterial(k, new double[] { 0, 0, 0 }, 0));
int[] domainIDs = new int[] { 0, };
foreach (int domainID in domainIDs)
{
foreach (Element element in modelReader.elementDomains[domainID])
{
////IReadOnlyList<Node> nodes = (IReadOnlyList<Node>)element.Nodes;
//var fluxElement1 = fluxFactory1.CreateElement(CellType.Quad4, nodes);
//model.SurfaceLoads.Add(fluxElement1);
//var bodyLoadElementCellType = element.ElementType.CellType;
//var nodes = (IReadOnlyList<Node>)element.Nodes;
//var domainLoad = new ConvectionDiffusionDomainLoad(material, bl[], ThermalDof.Temperature);
//var bodyLoadElementFactory = new BodyLoadElementFactory(domainLoad, model);
//var bodyLoadElement = bodyLoadElementFactory.CreateElement(CellType.Hexa8, nodes);
//model.BodyLoads.Add(bodyLoadElement);
//var surfaceElement = new SurfaceLoadElement();
//element.ID = TriID;
//surfaceElement.ElementType = DirichletElement1;
//model.SubdomainsDictionary[0].Elements.Add(dirichletElement1);
//model.ElementsDictionary.Add(TriID, surfaceElement);
//model.NodesDictionary[surfaceElement.ID].Constraints.Add(new Constraint() { DOF = ThermalDof.Temperature, Amount = 100 });
}
}
//foreach (Node node in model.Nodes)
//{
// model.Loads.Add(new Load() { Amount = bl[node.ID], Node = node, DOF = ThermalDof.Temperature });
//}
int[] boundaryIDs = new int[] { 0, };
int QuadID = model.ElementsDictionary.Count + 1;
foreach (int boundaryID in boundaryIDs)
{
foreach (IReadOnlyList <Node> nodes in modelReader.quadBoundaries[boundaryID])
{
//var fluxElement1 = fluxFactory1.CreateElement(CellType.Quad4, nodes);
//model.SurfaceLoads.Add(fluxElement1);
var dirichletElement1 = dirichletFactory1.CreateElement(CellType.Quad4, nodes);
model.SurfaceLoads.Add(dirichletElement1);
var SurfaceBoundaryElement = boundaryFactory3D.CreateElement(CellType.Quad4, nodes);
var element = new Element();
element.ID = QuadID;
element.ElementType = SurfaceBoundaryElement;
model.SubdomainsDictionary[0].Elements.Add(element);
model.ElementsDictionary.Add(QuadID, element);
foreach (Node node in nodes)
{
element.AddNode(node);
}
QuadID += 1;
}
}
boundaryIDs = new int[] { 5 };
foreach (int boundaryID in boundaryIDs)
{
foreach (IReadOnlyList <Node> nodes in modelReader.quadBoundaries[boundaryID])
{
var fluxElement1 = fluxFactory1.CreateElement(CellType.Quad4, nodes);
model.SurfaceLoads.Add(fluxElement1);
//var bodyLoadElement = bodyLoadElementFactory.CreateElement(CellType.Quad4, nodes);
//model.SurfaceLoads.Add(bodyLoadElement);
//var SurfaceBoundaryElement = boundaryFactory3D.CreateElement(CellType.Quad4, nodes);
//var element = new Element();
//element.ID = QuadID;
//element.ElementType = SurfaceBoundaryElement;
//model.SubdomainsDictionary[0].Elements.Add(element);
//model.ElementsDictionary.Add(QuadID, element);
//foreach (Node node in nodes)
//{
// element.AddNode(node);
//}
//QuadID += 1;
}
}
return(new Tuple <Model, IModelReader>(model, modelReader));
}
private static Tuple <Model, ComsolMeshReader2> CreateModel(double k, double[] U, double L)
{
string filename = Path.Combine(Directory.GetCurrentDirectory(), "InputFiles", "TumorGrowthModel", "fullModel.mphtxt");
ComsolMeshReader2 modelReader = new ComsolMeshReader2(filename, new double[] { k }, new double[][] { U }, new double[] { L });
Model model = modelReader.CreateModelFromFile();
//Boundary Conditions
var bodyLoad = new ConvectionDiffusionDomainLoad(new ConvectionDiffusionMaterial(k, U, L), 1, ThermalDof.Temperature);
var flux1 = new FluxLoad(1);
var flux2 = new FluxLoad(10);
var dir1 = new DirichletDistribution(list => {
return(Vector.CreateWithValue(list.Count, 1));
});
var dir2 = new DirichletDistribution(list => {
return(Vector.CreateWithValue(list.Count, 0));
});
var weakDirichlet1 = new WeakDirichlet(dir1, k);
var weakDirichlet2 = new WeakDirichlet(dir2, k);
var bodyLoadElementFactory = new BodyLoadElementFactory(bodyLoad, model);
var dirichletFactory1 = new SurfaceLoadElementFactory(weakDirichlet1);
var dirichletFactory2 = new SurfaceLoadElementFactory(weakDirichlet2);
var fluxFactory1 = new SurfaceLoadElementFactory(flux1);
var fluxFactory2 = new SurfaceLoadElementFactory(flux2);
var boundaryFactory3D = new SurfaceBoundaryFactory3D(0,
new ConvectionDiffusionMaterial(k, new double[] { 0, 0, 0 }, 0));
int[] domainIDs = new int[] { 0, };
foreach (int domainID in domainIDs)
{
foreach (Element element in modelReader.elementDomains[domainID])
{
//IReadOnlyList<Node> nodes = (IReadOnlyList<Node>)element.Nodes;
//var fluxElement1 = fluxFactory1.CreateElement(CellType.Quad4, nodes);
//model.SurfaceLoads.Add(fluxElement1);
//var bodyLoadElementCellType = element.ElementType.CellType;
//var nodes = (IReadOnlyList<Node>)element.Nodes;
//var bodyLoadElement = bodyLoadElementFactory.CreateElement(CellType.Hexa8, nodes);
//model.BodyLoads.Add(bodyLoadElement);
// var surfaceElement = new SurfaceLoadElement();
//element.ID = TriID;
//surfaceElement.ElementType = DirichletElement1;
//model.SubdomainsDictionary[0].Elements.Add(dirichletElement1);
//model.ElementsDictionary.Add(TriID, surfaceElement);
//model.NodesDictionary[surfaceElement.ID].Constraints.Add(new Constraint() { DOF = ThermalDof.Temperature, Amount = 100 });
}
}
//foreach (Node node in model.Nodes)
//{
// model.Loads.Add(new Load() { Amount = .25, Node = node, DOF = ThermalDof.Temperature });
//}
int[] boundaryIDs = new int[] { 0, 1, 2, 3, 4, 7 };
int TriID = model.ElementsDictionary.Count + 1;
foreach (int boundaryID in boundaryIDs)
{
foreach (IReadOnlyList <Node> nodes in modelReader.triBoundaries[boundaryID])
{
//IReadOnlyList<Node> nodes = (IReadOnlyList<Node>)element.Nodes;
//var fluxElement1 = fluxFactory1.CreateElement(CellType.Quad4, nodes);
//model.SurfaceLoads.Add(fluxElement1);
var dirichletElement1 = dirichletFactory1.CreateElement(CellType.Tri3, nodes);
model.SurfaceLoads.Add(dirichletElement1);
var surfaceBoundaryElement = boundaryFactory3D.CreateElement(CellType.Tri3, nodes);
var element = new Element();
element.ID = TriID;
element.ElementType = surfaceBoundaryElement;
model.SubdomainsDictionary[0].Elements.Add(element);
model.ElementsDictionary.Add(TriID, element);
foreach (Node node in nodes)
{
element.AddNode(node);
}
TriID += 1;
// var surfaceElement = new SurfaceLoadElement();
//element.ID = TriID;
//surfaceElement.ElementType = DirichletElement1;
//model.SubdomainsDictionary[0].Elements.Add(dirichletElement1);
//model.ElementsDictionary.Add(TriID, surfaceElement);
//model.NodesDictionary[surfaceElement.ID].Constraints.Add(new Constraint() { DOF = ThermalDof.Temperature, Amount = 100 });
}
}
boundaryIDs = new int[] { 6, 8, 9 };
foreach (int boundaryID in boundaryIDs)
{
foreach (IReadOnlyList <Node> nodes in modelReader.triBoundaries[boundaryID])
{
//IReadOnlyList<Node> nodes = (IReadOnlyList<Node>)element.Nodes;
//var fluxElement2 = fluxFactory2.CreateElement(CellType.Quad4, nodes);
//model.SurfaceLoads.Add(fluxElement2);
var dirichletElement2 = dirichletFactory2.CreateElement(CellType.Tri3, nodes);
model.SurfaceLoads.Add(dirichletElement2);
var surfaceBoundaryElement = boundaryFactory3D.CreateElement(CellType.Tri3, nodes);
var element = new Element();
element.ID = TriID;
element.ElementType = surfaceBoundaryElement;
model.SubdomainsDictionary[0].Elements.Add(element);
model.ElementsDictionary.Add(TriID, element);
foreach (Node node in nodes)
{
element.AddNode(node);
}
TriID += 1;
// var surfaceElement = new SurfaceLoadElement();
//element.ID = TriID;
//surfaceElement.ElementType = DirichletElement1;
//model.SubdomainsDictionary[0].Elements.Add(dirichletElement1);
//model.ElementsDictionary.Add(TriID, surfaceElement);
//model.NodesDictionary[surfaceElement.ID].Constraints.Add(new Constraint() { DOF = ThermalDof.Temperature, Amount = 100 });
}
}
//boundaryIDs = new int[] { 1, 2, 3, 4 };
//foreach (int boundaryID in boundaryIDs)
//{
// foreach (Element element in modelReader.elementBoundaries[boundaryID])
// {
// IReadOnlyList<Node> nodes = (IReadOnlyList<Node>)element.Nodes;
// var fluxElement = fluxFactory.CreateElement(CellType.Quad4, nodes);
// model.SurfaceLoads.Add(fluxElement);
// }
//}
return(new Tuple <Model, ComsolMeshReader2>(model, modelReader));
}
public Model CreateModelFromFile()
{
double c = 1.0;
double[] U = { 1.0, 1, 1 };
double k = 1.0;
double L = .0;
diffusionCeoff = k;
var elementFactory3D = new ConvectionDiffusionElement3DFactory(new ConvectionDiffusionMaterial(c, k, U, L));
var boundaryFactory3D = new SurfaceBoundaryFactory3D(0, new ConvectionDiffusionMaterial(c, k, U, L));
var model = new Model();
model.SubdomainsDictionary[0] = new Subdomain(0);
// Material
char[] delimeters = { ' ', '=', '\t' };
Attributes?name = null;
String[] text = System.IO.File.ReadAllLines(Filename);
elementBoundaries = new List <IList <Element> >();
elementDomains = new List <IList <Element> >();
nodeBoundaries = new List <IList <Node> >();
for (int i = 0; i < 10; i++)
{
elementBoundaries.Add(new List <Element>());
nodeBoundaries.Add(new List <Node>());
}
for (int i = 0; i < 2; i++)
{
elementDomains.Add(new List <Element>());
}
for (int i = 0; i < text.Length; i++)
{
String[] line = text[i].Split(delimeters, StringSplitOptions.RemoveEmptyEntries);
StringBuilder comparisonString = new StringBuilder(null, 50);
if (line.Length == 0)
{
continue;
}
if (line[0] == "3" & line.Length > 1)
{
try
{
name = (Attributes)Enum.Parse(typeof(Attributes), line[1]);
}
catch (Exception exception)
{
name = null;
}
}
else
{
for (int linePosition = 0; linePosition < line.Length; linePosition++)
{
if (line[linePosition] == "#")
{
for (int ij = linePosition + 1; ij < line.Length; ij++)
{
comparisonString.Append(line[ij]);
}
try
{
name = (Attributes)Enum.Parse(typeof(Attributes), comparisonString.ToString());
}
catch (Exception exception)
{
name = null;
}
}
}
}
switch (name)
{
case Attributes.sdim:
int NumberOfDimensions = Int32.Parse(line[0]);
break;
case Attributes.numberofmeshpoints:
NumberOfNodes = Int32.Parse(line[0]);
break;
case Attributes.Meshpointcoordinates:
IList <Node> nodelist = new List <Node> {
null
};
for (int j = 0; j < NumberOfNodes; j++)
{
i++;
line = text[i].Split(delimeters);
int nodeGlobalID = j;
double x = Double.Parse(line[0], CultureInfo.InvariantCulture);
double y = Double.Parse(line[1], CultureInfo.InvariantCulture);
double z = Double.Parse(line[2], CultureInfo.InvariantCulture);
Node node = new Node(nodeGlobalID, x, y, z);
model.NodesDictionary.Add(nodeGlobalID, node);
nodelist.Add(node);
}
break;
case Attributes.tri:
do
{
i++;
line = text[i].Split(delimeters);
} while (line[0] == "");
i++;
line = text[i].Split(delimeters);
NumberOfTriElements = Int32.Parse(line[0]);
i++;
IList <Node> nodesCollection = new List <Node>();
for (int TriID = 0; TriID < NumberOfTriElements; TriID++)
{
i++;
line = text[i].Split(delimeters);
for (int j = 0; j < (line.Length - 1); j++)
{
nodesCollection.Add(model.NodesDictionary[Int32.Parse(line[j])]);
}
IReadOnlyList <Node> nodes = new List <Node>
{
model.NodesDictionary[Int32.Parse(line[2])],
model.NodesDictionary[Int32.Parse(line[1])],
model.NodesDictionary[Int32.Parse(line[0])]
};
var Tri3 = boundaryFactory3D.CreateElement(CellType.Tri3, nodes);
var element = new Element();
element.ID = TriID;
element.ElementType = Tri3;
model.SubdomainsDictionary[0].Elements.Add(element);
model.ElementsDictionary.Add(TriID, element);
double r3 = 0;
foreach (Node node in nodes)
{
element.AddNode(node);
r3 += Math.Sqrt(Math.Pow(node.X, 2) + Math.Pow(node.Y, 2) + Math.Pow(node.Z, 2));
}
if (element.Nodes[0].X == 0 && r3 < 3 * 5e-4)
{
elementBoundaries[0].Add(model.ElementsDictionary[TriID]);
//model.NodesDictionary[element.Nodes[0].ID].Constraints.Add(new Constraint() { DOF = ThermalDof.Temperature, Amount = 10 });
}
else if (element.Nodes[0].Y == 0 && r3 < 3 * 5e-4)
{
elementBoundaries[1].Add(model.ElementsDictionary[TriID]);
}
else if (element.Nodes[0].Z == 0 && r3 < 3 * 5e-4)
{
elementBoundaries[2].Add(model.ElementsDictionary[TriID]);
}
else if (element.Nodes[0].X == 0 && r3 > 3 * 5e-4)
{
elementBoundaries[3].Add(model.ElementsDictionary[TriID]);
}
else if (element.Nodes[0].Y == 0 && r3 > 3 * 5e-4)
{
elementBoundaries[4].Add(model.ElementsDictionary[TriID]);
}
else if (r3 == 3 * 5e-4)
{
elementBoundaries[5].Add(model.ElementsDictionary[TriID]);
}
else if (element.Nodes[0].Z == 0.1 && element.Nodes[1].Z == 0.1 && element.Nodes[2].Z == 0.1)
{
elementBoundaries[6].Add(model.ElementsDictionary[TriID]);
}
else if (element.Nodes[0].Z == 0 && r3 > 3 * 5e-4)
{
elementBoundaries[7].Add(model.ElementsDictionary[TriID]);
}
else if (element.Nodes[0].Y == 0.1 && element.Nodes[1].Y == 0.1 && element.Nodes[2].Y == 0.1)
{
elementBoundaries[8].Add(model.ElementsDictionary[TriID]);
}
else if (element.Nodes[0].X == 0.1 && element.Nodes[1].X == 0.1 && element.Nodes[2].X == 0.1)
{
elementBoundaries[9].Add(model.ElementsDictionary[TriID]);
}
}
nodesCollection = nodesCollection.Distinct().ToList();
foreach (Node node in nodesCollection)
{
double r = Math.Sqrt(Math.Pow(node.X, 2) + Math.Pow(node.Y, 2) + Math.Pow(node.Z, 2));
if (node.X == 0 && node.Y <= 5e-4 && node.Z <= 5e-4)
{
nodeBoundaries[0].Add(model.NodesDictionary[node.ID]);
//model.NodesDictionary[node.ID].Constraints.Add(new Constraint() { DOF = ThermalDof.Temperature, Amount = 10 });
}
else if (node.X <= 5e-4 && node.Y == 0 && node.Z <= 5e-4)
{
nodeBoundaries[1].Add(model.NodesDictionary[node.ID]);
}
else if (node.X <= 5e-4 && node.Y <= 5e-4 && node.Z == 0)
{
nodeBoundaries[2].Add(model.NodesDictionary[node.ID]);
}
else if (node.X == 0 && r > 5e-4)
{
nodeBoundaries[3].Add(model.NodesDictionary[node.ID]);
}
else if (node.Y == 0 && r > 5e-4)
{
nodeBoundaries[4].Add(model.NodesDictionary[node.ID]);
}
else if (r == 5e-4)
{
nodeBoundaries[5].Add(model.NodesDictionary[node.ID]);
}
else if (node.Z == 0.1)
{
nodeBoundaries[6].Add(model.NodesDictionary[node.ID]);
}
else if (node.Z == 0 && r > 5e-4)
{
nodeBoundaries[7].Add(model.NodesDictionary[node.ID]);
}
else if (node.Y == 0.1)
{
nodeBoundaries[8].Add(model.NodesDictionary[node.ID]);
}
else if (node.X == 0.1)
{
nodeBoundaries[9].Add(model.NodesDictionary[node.ID]);
}
//else
//{
// model.Loads.Add(new Load() { Node = model.NodesDictionary[node.ID], DOF = ThermalDof.Temperature, Amount = 10 });
//}
}
break;
case Attributes.quad:
do
{
i++;
line = text[i].Split(delimeters);
} while (line[0] == "");
i++;
line = text[i].Split(delimeters);
NumberOfTriElements = Int32.Parse(line[0]);
i++;
IList <Node> quadNodesCollection = new List <Node>();
for (int QuadID = 0; QuadID < NumberOfTriElements; QuadID++)
{
i++;
line = text[i].Split(delimeters);
for (int j = 0; j < (line.Length - 1); j++)
{
quadNodesCollection.Add(model.NodesDictionary[Int32.Parse(line[j])]);
}
IReadOnlyList <Node> nodes = new List <Node>
{
model.NodesDictionary[Int32.Parse(line[3])],
model.NodesDictionary[Int32.Parse(line[2])],
model.NodesDictionary[Int32.Parse(line[1])],
model.NodesDictionary[Int32.Parse(line[0])]
};
var Quad = boundaryFactory3D.CreateElement(CellType.Quad4, nodes);
var element = new Element();
element.ID = QuadID;
element.ElementType = Quad;
model.SubdomainsDictionary[0].Elements.Add(element);
model.ElementsDictionary.Add(QuadID, element);
//double r3 = 0;
//foreach (Node node in nodes)
//{
// element.AddNode(node);
// r3 += Math.Sqrt(Math.Pow(node.X, 2) + Math.Pow(node.Y, 2) + Math.Pow(node.Z, 2));
//}
//if (element.Nodes[0].X == 0 && r3 < 3 * 5e-4)
//{
// elementBoundaries[0].Add(model.ElementsDictionary[QuadID]);
// //model.NodesDictionary[element.Nodes[0].ID].Constraints.Add(new Constraint() { DOF = ThermalDof.Temperature, Amount = 10 });
//}
//else if (element.Nodes[0].Y == 0 && r3 < 3 * 5e-4)
//{
// elementBoundaries[1].Add(model.ElementsDictionary[QuadID]);
//}
//else if (element.Nodes[0].Z == 0 && r3 < 3 * 5e-4)
//{
// elementBoundaries[2].Add(model.ElementsDictionary[QuadID]);
//}
//else if (element.Nodes[0].X == 0 && r3 > 3 * 5e-4)
//{
// elementBoundaries[3].Add(model.ElementsDictionary[QuadID]);
//}
//else if (element.Nodes[0].Y == 0 && r3 > 3 * 5e-4)
//{
// elementBoundaries[4].Add(model.ElementsDictionary[QuadID]);
//}
//else if (r3 == 3 * 5e-4)
//{
// elementBoundaries[5].Add(model.ElementsDictionary[QuadID]);
//}
//else if (element.Nodes[0].Z == 0.1 && element.Nodes[1].Z == 0.1 && element.Nodes[2].Z == 0.1)
//{
// elementBoundaries[6].Add(model.ElementsDictionary[QuadID]);
//}
//else if (element.Nodes[0].Z == 0 && r3 > 3 * 5e-4)
//{
// elementBoundaries[7].Add(model.ElementsDictionary[QuadID]);
//}
//else if (element.Nodes[0].Y == 0.1 && element.Nodes[1].Y == 0.1 && element.Nodes[2].Y == 0.1)
//{
// elementBoundaries[8].Add(model.ElementsDictionary[QuadID]);
//}
//else if (element.Nodes[0].X == 0.1 && element.Nodes[1].X == 0.1 && element.Nodes[2].X == 0.1)
//{
// elementBoundaries[9].Add(model.ElementsDictionary[QuadID]);
//}
}
quadNodesCollection = quadNodesCollection.Distinct().ToList();
foreach (Node node in quadNodesCollection)
{
double r = Math.Sqrt(Math.Pow(node.X, 2) + Math.Pow(node.Y, 2) + Math.Pow(node.Z, 2));
if (node.X == 0 && node.Y <= 5e-4 && node.Z <= 5e-4)
{
nodeBoundaries[0].Add(model.NodesDictionary[node.ID]);
//model.NodesDictionary[node.ID].Constraints.Add(new Constraint() { DOF = ThermalDof.Temperature, Amount = 10 });
}
else if (node.X <= 5e-4 && node.Y == 0 && node.Z <= 5e-4)
{
nodeBoundaries[1].Add(model.NodesDictionary[node.ID]);
}
else if (node.X <= 5e-4 && node.Y <= 5e-4 && node.Z == 0)
{
nodeBoundaries[2].Add(model.NodesDictionary[node.ID]);
}
else if (node.X == 0 && r > 5e-4)
{
nodeBoundaries[3].Add(model.NodesDictionary[node.ID]);
}
else if (node.Y == 0 && r > 5e-4)
{
nodeBoundaries[4].Add(model.NodesDictionary[node.ID]);
}
else if (r == 5e-4)
{
nodeBoundaries[5].Add(model.NodesDictionary[node.ID]);
}
else if (node.Z == 0.1)
{
nodeBoundaries[6].Add(model.NodesDictionary[node.ID]);
}
else if (node.Z == 0 && r > 5e-4)
{
nodeBoundaries[7].Add(model.NodesDictionary[node.ID]);
}
else if (node.Y == 0.1)
{
nodeBoundaries[8].Add(model.NodesDictionary[node.ID]);
}
else if (node.X == 0.1)
{
nodeBoundaries[9].Add(model.NodesDictionary[node.ID]);
}
//else
//{
// model.Loads.Add(new Load() { Node = model.NodesDictionary[node.ID], DOF = ThermalDof.Temperature, Amount = 10 });
//}
}
break;
case Attributes.tet:
do
{
i++;
line = text[i].Split(delimeters);
} while (line[0] == "");
i++;
line = text[i].Split(delimeters);
NumberOfTetElements = Int32.Parse(line[0]);
i++;
for (int TetID = NumberOfTriElements + 1; TetID < NumberOfTriElements + NumberOfTetElements; TetID++)
{
i++;
line = text[i].Split(delimeters);
IReadOnlyList <Node> nodes = new List <Node>
{
model.NodesDictionary[Int32.Parse(line[3])],
model.NodesDictionary[Int32.Parse(line[2])],
model.NodesDictionary[Int32.Parse(line[1])],
model.NodesDictionary[Int32.Parse(line[0])]
};
var Tet4 = elementFactory3D.CreateElement(CellType.Tet4, nodes);
var element = new Element();
element.ID = TetID;
element.ElementType = Tet4;
double r4 = 0;
foreach (Node node in nodes)
{
element.AddNode(node);
r4 += Math.Sqrt(Math.Pow(node.X, 2) + Math.Pow(node.Y, 2) + Math.Pow(node.Z, 2));
}
model.SubdomainsDictionary[0].Elements.Add(element);
model.ElementsDictionary.Add(TetID, element);
if (r4 < 4 * 5e-4)
{
elementDomains[0].Add(element);
}
else
{
elementDomains[1].Add(element);
}
}
name = null;
break;
}
}
return(model);
}
private static Model CreateModel()
{
IList <IList <Node> > nodeBoundaries;
IList <IList <Element> > elementBoundaries;
double k = 1.0;
double[] U = { 1.0, 1, 1 };
double L = 0.0;
double h = 1.0;
var elementFactory3D = new ConvectionDiffusionElement3DFactory(new ConvectionDiffusionMaterial(k, U, L));
var boundaryFactory3D = new SurfaceBoundaryFactory3D(0, new ConvectionDiffusionMaterial(k, U, L));
var model = new Model();
model.SubdomainsDictionary[0] = new Subdomain(0);
elementBoundaries = new List <IList <Element> >();
nodeBoundaries = new List <IList <Node> >();
for (int i = 0; i < 10; i++)
{
elementBoundaries.Add(new List <Element>());
nodeBoundaries.Add(new List <Node>());
}
double[,] nodeData = new double[, ] {
{ 0, 0, 0 },
{ 1, 0, 0 },
{ 1, 1, 0 },
{ 0, 1, 0 },
{ 0, 0, 1 },
{ 1, 0, 1 },
{ 1, 1, 1 },
{ 0, 1, 1 },
{ 0, 0, 2 },
{ 1, 0, 2 },
{ 1, 1, 2 },
{ 0, 1, 2 }
};
for (int nNode = 0; nNode < nodeData.GetLength(0); nNode++)
{
model.NodesDictionary.Add(nNode, new Node(id: nNode, x: nodeData[nNode, 0], y: nodeData[nNode, 1], z: nodeData[nNode, 2]));
}
IReadOnlyList <Node> nodes1 = new List <Node>
{
model.NodesDictionary[0],
model.NodesDictionary[1],
model.NodesDictionary[2],
model.NodesDictionary[3],
model.NodesDictionary[4],
model.NodesDictionary[5],
model.NodesDictionary[6],
model.NodesDictionary[7],
};
IReadOnlyList <Node> nodes2 = new List <Node>
{
model.NodesDictionary[4],
model.NodesDictionary[5],
model.NodesDictionary[6],
model.NodesDictionary[7],
model.NodesDictionary[8],
model.NodesDictionary[9],
model.NodesDictionary[10],
model.NodesDictionary[11],
};
IList <IReadOnlyList <Node> > face = new List <IReadOnlyList <Node> >();
//face = new List<IReadOnlyList<Node>>();
for (int i = 0; i < 6; i++)
{
face.Add(new List <Node>());
}
face[0] = new List <Node>
{
model.NodesDictionary[0],
model.NodesDictionary[1],
model.NodesDictionary[2],
model.NodesDictionary[3],
};
face[1] = new List <Node>
{
model.NodesDictionary[8],
model.NodesDictionary[9],
model.NodesDictionary[10],
model.NodesDictionary[11],
};
face[2] = new List <Node>
{
model.NodesDictionary[0],
model.NodesDictionary[1],
model.NodesDictionary[9],
model.NodesDictionary[8],
};
face[3] = new List <Node>
{
model.NodesDictionary[1],
model.NodesDictionary[2],
model.NodesDictionary[11],
model.NodesDictionary[10],
};
face[4] = new List <Node>
{
model.NodesDictionary[2],
model.NodesDictionary[3],
model.NodesDictionary[11],
model.NodesDictionary[10],
};
face[5] = new List <Node>
{
model.NodesDictionary[3],
model.NodesDictionary[0],
model.NodesDictionary[8],
model.NodesDictionary[11],
};
//first hexa8
int[] elementData_1 = new int[] { 0, 1, 2, 3, 4, 5, 6, 7 };// the last line will not be used. We assign only one element
var Hexa8_1 = elementFactory3D.CreateElement(CellType.Hexa8, nodes1);
var element_1 = new Element();
element_1.ID = 0;
element_1.ElementType = Hexa8_1;
for (int j = 0; nodes1.Count < 8; j++)
{
element_1.NodesDictionary.Add(nodes1[j].ID, model.NodesDictionary[elementData_1[j]]);
}
model.SubdomainsDictionary[0].Elements.Add(element_1);
model.ElementsDictionary.Add(0, element_1);
//second hexa8
int[] elementData_2 = new int[] { 4, 5, 6, 7, 8, 9, 10, 11 };// the last line will not be used. We assign only one element
var Hexa8_2 = elementFactory3D.CreateElement(CellType.Hexa8, nodes2);
var element_2 = new Element();
element_2.ID = 0;
element_2.ElementType = Hexa8_2;
for (int j = 0; nodes1.Count < 8; j++)
{
element_2.NodesDictionary.Add(nodes2[j].ID, model.NodesDictionary[elementData_2[j]]);
}
model.SubdomainsDictionary[0].Elements.Add(element_2);
model.ElementsDictionary.Add(1, element_2);
//newmann and dirichlet load
var flux = new FluxLoad(10);
var dir1 = new DirichletDistribution(list => {
return(Vector.CreateWithValue(list.Count, 0));
});
var dir2 = new DirichletDistribution(list => {
return(Vector.CreateWithValue(list.Count, 10));
});
var weakDirichlet1 = new WeakDirichlet(dir1, k);
var weakDirichlet2 = new WeakDirichlet(dir2, k);
var dirichletFactory1 = new SurfaceLoadElementFactory(weakDirichlet1);
var dirichletFactory2 = new SurfaceLoadElementFactory(weakDirichlet2);
var fluxFactory = new SurfaceLoadElementFactory(flux);
foreach (int i in new int[] { 2 })
{
var Quad = boundaryFactory3D.CreateElement(CellType.Quad4, face[i - 1]);
var faceElement = new Element();
faceElement.ID = i;
faceElement.ElementType = Quad;
foreach (Node node in face[i - 1])
{
faceElement.AddNode(node);
}
model.SubdomainsDictionary[0].Elements.Add(faceElement);
model.ElementsDictionary.Add(i, faceElement);
var dirichletElement = dirichletFactory1.CreateElement(CellType.Quad4, face[i - 1]);
//var fluxElement = fluxFactory.CreateElement(CellType.Quad4, face[i - 1]);
model.SurfaceLoads.Add(dirichletElement);
//model.SurfaceLoads.Add(fluxElement);
}
foreach (int i in new int[] { 3 })
{
var Quad = boundaryFactory3D.CreateElement(CellType.Quad4, face[i - 1]);
var faceElement = new Element();
faceElement.ID = i;
faceElement.ElementType = Quad;
foreach (Node node in face[i - 1])
{
faceElement.AddNode(node);
}
model.SubdomainsDictionary[0].Elements.Add(faceElement);
model.ElementsDictionary.Add(i, faceElement);
var dirichletElement = dirichletFactory2.CreateElement(CellType.Quad4, face[i - 1]);
//var fluxElement = fluxFactory.CreateElement(CellType.Quad4, face[i - 1]);
model.SurfaceLoads.Add(dirichletElement);
//model.SurfaceLoads.Add(fluxElement);
}
//constraints
//foreach (int i in new int[] { 4, 5, 6, 7 })
//{
// model.NodesDictionary[i].Constraints.Add(new Constraint()
// {
// Amount = 0,
// DOF = ThermalDof.Temperature
// });
//}
//// loads
//Load load1;
//foreach (int i in new int[] {0, 1, 2, 3})
//{
// load1 = new Load()
// {
// Node = model.NodesDictionary[i],
// DOF = ConvectionDiffusionDof.Temperature,
// Amount = 12.5
// };
// model.Loads.Add(load1);
//}
return(model);
}