/// <summary>
/// WindorsAPI的初始化.
/// </summary>
public static void OpenWithWindows(Action action)
{
//注册输入事件 输入事件来自于WindowsAPI
StandardIO.GetKeyEvent += WindowsAPI.GetInput;
StandardIO.GetMouseButtonEvent += WindowsAPI.GetInputMouse;
//将窗体的对应方法绑到核心事件
StandardIO.DebugLogEvent += WindowsAPI.DebugLog;
StandardIO.GetMousePositionInPixelEvent += WindowsAPI.GetMousePositionPixel;
StandardIO.RendererEvent += WindowsAPI.Renderer;
RuntimeEngine.Init();
//在这里添加新的系统
RuntimeEngine.SetSystemUpdate();
//执行引擎的初始化代码
action.Invoke();
RuntimeEngine.Run();
}
private void button5_Click(object sender, EventArgs e)
{
//Perform Prediction
CreateNeuralNetwork();
DataTable dt = new DataTable("Runtime Result");
dt.Columns.Add("Pattern");
dt.Columns.Add("Position");
dt.Columns.Add("Prediction");
DataTable peptideDataTable;
List <string> listOfTargetResidue = new List <string>();
listOfTargetResidue.Add(txtTargetResidues.Text);
int sizeOfPeptide = int.Parse(textBox2.Text);
peptideDataTable = ResidueBasedPeptideGenerator.ExtractPeptide(txtSequence.Text, listOfTargetResidue, sizeOfPeptide, false);
List <string> listOfInputAttributesStringCollectionType = new List <string>();
List <string> listOfInputAttributesListType = new List <string>();
for (int index = (-1 * sizeOfPeptide); index <= sizeOfPeptide; index++)
{
listOfInputAttributesStringCollectionType.Add("P" + index.ToString());
listOfInputAttributesListType.Add("P" + index.ToString());
}
DataTableEncodingManager encodingManager = new DataTableEncodingManager(codeDictionary, listOfInputAttributesListType, peptideDataTable, true, true);
encodingManager.Run();
DataTable encodedPeptideDataTable = encodingManager._EncodedDataTable;
int binaryStringLenghtPepAminoAcid = 0;
foreach (object key in codeDictionary.Keys)
{
if (codeDictionary[key.ToString()].Length > binaryStringLenghtPepAminoAcid)
{
binaryStringLenghtPepAminoAcid = codeDictionary[key.ToString()].Length;
}
}
listOfInputAttributesStringCollectionType = new List <string>();
int ctr;
for (int index = (-1 * sizeOfPeptide); index <= sizeOfPeptide; index++)
{
for (ctr = 1; ctr <= binaryStringLenghtPepAminoAcid; ctr++)
{
listOfInputAttributesStringCollectionType.Add("P" + index.ToString() + "_" + ctr.ToString());
}
}
runtimeEngine = new RuntimeEngine(1, ANN, listOfInputAttributesStringCollectionType);
DataRow row;
string pattern;
float predictedValue;
float patternIndex = 1;
float totalPattern = encodedPeptideDataTable.Rows.Count;
richTextBox1.Text = "Prediction Evaluation Started...";
DataRow encodedPatternRrow;
DataRow patternRow;
dataGridView2.DataSource = encodedPeptideDataTable;
for (patternIndex = 0; patternIndex < totalPattern; patternIndex++)
{
encodedPatternRrow = encodedPeptideDataTable.Rows[(int)patternIndex];
patternRow = peptideDataTable.Rows[(int)patternIndex];
pattern = "";
for (ctr = 0; ctr < listOfInputAttributesListType.Count; ctr++)
{
pattern = pattern + patternRow[listOfInputAttributesListType[ctr]].ToString();
}
//row
runtimeEngine.PatternRow = encodedPatternRrow;
predictedValue = runtimeEngine.Run();
row = dt.NewRow();
row["Pattern"] = pattern;
row["Prediction"] = predictedValue.ToString();
row["Position"] = patternRow["Position"].ToString();
dt.Rows.Add(row);
SetMessage(pattern + " => " + predictedValue.ToString());
richTextBox1.Text = Convert.ToString((patternIndex + 1)) + " - " + pattern + " => " + predictedValue.ToString() + Environment.NewLine;
}
dataGridView2.DataSource = dt;
}
private void ExecuteCommand(string command)
{
string[] commands = command.Split(' ');
switch (commands[0])
{
case "ls":
ListFiles();
break;
case "clear":
Console.Clear();
break;
case "touch":
CreateBlankFile(commands[1]);
break;
case "cd":
if (commands[1] == "..")
{
var bits = _myLib.CurrentDirectory.Split('/');
_myLib.CurrentDirectory = "/";
if (bits.Length == 3)
{
_myLib.CurrentDirectory = "/";
return;
}
for (var i = 0; i < bits.Length - 2; i++)
{
_myLib.CurrentDirectory += bits[i];
}
_myLib.CurrentDirectory += "/";
return;
}
if (_currentDrive.Exists(FileSystemPath.Parse(_myLib.CurrentDirectory + commands[1] + "/")))
{
_myLib.CurrentDirectory = _myLib.CurrentDirectory + commands[1] + "/";
_myLib.CurrentDirectory = _myLib.CurrentDirectory;
}
else
{
Console.WriteLine("Cannot find {0}", commands[1]);
}
break;
default:
if (commands[0].StartsWith("./"))
{
string path = commands[0].Substring(2);
RuntimeEngine myaProcess = new RuntimeEngine(path, _kernel, _myLib);
myaProcess.Initialize(_processManager, _myLib);
_processManager.Register(myaProcess);
myaProcess.Run(commands.Skip(1).ToArray());
break;
}
RunApplication(commands[0], commands.Skip(1).ToArray());
break;
}
}
private static void Main()
{
RuntimeEngine runtimeEngine = new RuntimeEngine();
runtimeEngine.Run(100);
}
