コード例 #1
0
        /// <summary>
        /// Retrieves a plate description from the web service.
        /// </summary>
        /// <param name="robot">The robot to find the plate type for.</param>
        /// <param name="plateID">The <c>plateID</c> of the plate.</param>
        /// <returns>The <c>IPlateInfo</c> describing the plate.</returns>
        public IPlateInfo FetchPlateInfo(IRobot robot, string plateID)
        {
            // Check arguments - do it up front to avoid possible inconsistencies later
            if (robot == null)
            {
                throw new System.NullReferenceException("robot must not be null");
            }
            if (plateID == null)
            {
                throw new System.NullReferenceException("plateID must not be null");
            }

            // Log the call
            if (_log.IsDebugEnabled)
            {
                string msg = "Called " + this + ".FetchPlateInfo(robot=" + robot.ToString() + ", plateID=\"" + plateID + "\")";
                _log.Debug(msg);
            }

            // Special case for ReliabilityTestPlate
            if ("ReliabilityTestPlate".Equals(plateID))
            {
                OPPF.Integrations.ImagerLink.PlateInfo dummy = new OPPF.Integrations.ImagerLink.PlateInfo();
                dummy.SetDateDispensed(DateTime.Now);
                dummy.SetExperimentName("Dummy Expt Name");
                dummy.SetPlateNumber(1);
                dummy.SetPlateTypeID("1");
                dummy.SetProjectName("Dummy Project Name");
                dummy.SetUserEmail("DummyEmailAddress");
                dummy.SetUserName("Dummy UserName");

                return(dummy);
            }

            // Declare the return variable
            OPPF.Integrations.ImagerLink.PlateInfo pi = null;

            try
            {
                // Create and populate the request object
                getPlateInfo request = new getPlateInfo();
                request.robot   = OPPF.Utilities.Robot2Utils.createProxy(robot);
                request.plateID = plateID;

                // Make the web service call
                WSPlate wsPlate = WSPlateFactory.getWSPlate2();

                _log.Info("Calling WSPlate.getPlateInfo()");
                getPlateInfoResponse response = wsPlate.getPlateInfo(request);

                // Get the webservice proxy PlateInfo
                OPPF.Proxies2.PlateInfo ppi = response.getPlateInfoReturn;

                // Map it into an IPlateInfo
                pi = new OPPF.Integrations.ImagerLink.PlateInfo();
                pi.SetDateDispensed(ppi.dateDispensed);
                pi.SetExperimentName(ppi.experimentName);
                pi.SetPlateNumber(ppi.plateNumber);
                // TODO Figure out how to get pims to tell us the right answer
                //pi.SetPlateTypeID(ppi.plateTypeID);
                pi.SetPlateTypeID(PlateInfoProviderNew.getIDForName(ppi.plateTypeID));
                pi.SetProjectName(ppi.projectName);
                pi.SetUserEmail(ppi.userEmail);
                pi.SetUserName(ppi.userName);
            }
            catch (Exception e)
            {
                string msg = "WSPlate.getPlateInfo threw " + e.GetType() + ":\n" + e.Message + "\nfor plate \"" + plateID + "\" in robot \"" + robot.Name + "\"\n - probably not in LIMS - not fatal.";
                if (e is System.Web.Services.Protocols.SoapException)
                {
                    System.Web.Services.Protocols.SoapException ee = (System.Web.Services.Protocols.SoapException)e;
                    msg = msg + "\n\n" + ee.Detail.InnerXml;
                }

                // Log it
                _log.Error(msg, e);

                // Don't rethrow - return null - don't want to stop imaging
            }

            // Return the IPlateInfo
            return(pi);
        }
コード例 #2
0
        /// <summary>
        /// Retrieves a dummy plate description.
        /// </summary>
        /// <param name="robot">The robot to find the plate type for.</param>
        /// <param name="plateID">The <c>plateID</c> of the plate.</param>
        /// <returns>The <c>IPlateInfo</c> describing the plate.</returns>
        public IPlateInfo FetchPlateInfo(IRobot robot, string plateID)
        {
            // Check arguments - do it up front to avoid possible inconsistencies later
            if (robot == null)
            {
                throw new System.NullReferenceException("robot must not be null");
            }
            if (plateID == null)
            {
                throw new System.NullReferenceException("plateID must not be null");
            }

            // Log the call
            if (_log.IsDebugEnabled)
            {
                string msg = "Called " + this + ".DummyFetchPlateInfo(robot=" + robot.ToString() + ", plateID=\"" + plateID + "\")";
                _log.Debug(msg);
            }

            OPPF.Integrations.ImagerLink.PlateInfo dummy = new OPPF.Integrations.ImagerLink.PlateInfo();
            dummy.SetDateDispensed(DateTime.Now);
            dummy.SetExperimentName("Dummy Expt for " + plateID);

            Regex numberregex = new Regex("^\\d+$");

            if (numberregex.IsMatch(plateID))
            {
                int start = plateID.Length - 8;
                if (start < 0)
                {
                    start = 0;
                }
                dummy.SetPlateNumber(Convert.ToInt32(plateID.Substring(start)));
            }
            else
            {
                dummy.SetPlateNumber(1);
            }

            /*
             * platetypeid |             strplatetype             | intcolumns | introws | intsubpositions | intsubpositionheight | strbarcodepattern | intdefaultscheduleplan
             * -------------+--------------------------------------+------------+---------+-----------------+----------------------+-------------------+------------------------
             * 1 | Greiner, central shelf only          |         12 |       8 |               1 |                 2107 | 4413xxxxxxxx      |                      1
             * 2 | OPPF Full Greiner, all three shelves |         12 |       8 |               3 |                 2107 | 3313xxxxxxxx      |                      1
             * 3 | Fluidigm 1.96                        |         12 |       8 |               1 |                  100 | 109xxxxxxx        |                      2
             * 4 | Fluidigm 4.96                        |         12 |       8 |               4 |                  100 | 110xxxxxxx        |                      2
             * 5 | Fluidigm 8.96                        |         12 |       8 |               8 |                  100 | 112xxxxxxx        |                      2
             * 6 | Fluidigm DC10 1.96                   |         12 |       8 |               1 |                  100 | 122xxxxxxx        |                      2
             * 7 | Greiner DC                           |         12 |       8 |               1 |                 2107 | 441310xxxxxx      |                      1
             * 8 | STRUBI Capillary Plates              |         12 |       8 |               1 |                  100 | 441311xxxxxx      |                      1
             * 9 | Zurich Capillary Plates              |          3 |      16 |              19 |                  100 | 441312xxxxxx      |                      2
             */
            if (plateID.StartsWith("109"))
            {
                dummy.SetPlateTypeID("3");
            }
            else if (plateID.StartsWith("110"))
            {
                dummy.SetPlateTypeID("4");
            }
            else if (plateID.StartsWith("112"))
            {
                dummy.SetPlateTypeID("5");
            }
            else if (plateID.StartsWith("122"))
            {
                dummy.SetPlateTypeID("6");
            }
            else if (plateID.StartsWith("441310"))
            {
                dummy.SetPlateTypeID("7");
            }
            else if (plateID.StartsWith("441311"))
            {
                dummy.SetPlateTypeID("8");
            }
            else if (plateID.StartsWith("441312"))
            {
                dummy.SetPlateTypeID("9");
            }
            else
            {
                dummy.SetPlateTypeID("1");
            }

            dummy.SetProjectName("Dummy Project for " + plateID);
            dummy.SetUserEmail("DummyEmailAddress");
            dummy.SetUserName("Dummy UserName");

            // Return the IPlateInfo
            return(dummy);
        }