public bool Save(Stream streamIn)
{
try
{
Model.Save(streamIn);
} catch (Exception)
{
return(false);
}
return(true);
}
public void TestModelSaveAndLoad()
{
TestTrainValidData();
string modelFileName = "NaiveBayesFile.txt";
NaiveBayesModel.Save(new StreamWriter(modelFileName).BaseStream);
var nbTestModel = new NaiveBayes();
nbTestModel.Load(new StreamReader(modelFileName).BaseStream);
Assert.AreEqual(nbTestModel, NaiveBayesModel);
File.Delete(modelFileName);
}
/// <summary>
/// Classify our data using naive bias classifer and save the model.
/// </summary>
/// <param name="train_data">Frame objects that we will use to train classifers.</param>
/// <param name="test_data">Frame objects that we will use to test classifers.</param>
/// <param name="train_label">Labels of the train data.</param>
/// <param name="test_label">Labels of the test data.</param>
/// <param name="Classifier_Path">Path where we want to save the classifer on the disk.</param>
/// <param name="Classifier_Name">Name of the classifer we wnat to save.</param>
/// <returns></returns>
public void Naive_Bias(double[][] train_data, double[][] test_data, int[] train_label, int[] test_label, String Classifier_Path, String Classifier_Name)
{
Accord.Math.Random.Generator.Seed = 0;
int[][] tr_da = new int[train_data.Length][];
for (int i = 0; i < train_data.Length; i++)
{
int[] temp = new int[2];
temp[0] = (int)train_data[i][0];
temp[1] = (int)train_data[i][1];
tr_da[i] = temp;
}
int[][] te_da = new int[test_data.Length][];
for (int i = 0; i < test_data.Length; i++)
{
int[] temp = new int[2];
temp[0] = (int)test_data[i][0];
temp[1] = (int)test_data[i][1];
te_da[i] = temp;
}
// Let us create a learning algorithm
var learner = new NaiveBayesLearning();
// and teach a model on the data examples
NaiveBayes nb = learner.Learn(tr_da, train_label);
// Now, let's test the model output for the first input sample:
//int answer = nb.Decide(new int[] {20,10000}); // should be 1
double[] scores = nb.Probability(te_da);
nb.Save(Path.Combine(Classifier_Path, Classifier_Name));
}
static void Main(string[] args)
{
/*
* Takes a csv files as input and trains a naive bayes classfier, if the test flag is set the rountine
* will calculate the accuracy of the input files using the previous saved model in the exeution directioy
* If the test flag is set a new classifier is not trainied
* but the previous model is loaded and used agains the test data.
*
* arg 1 = training file or test file
* arg 2 = label file
* arg 3 = test flag (-s or -S)
* arg 4 = Specify file name of model file
*/
const int minargs = 2;
const int maxargs = 4;
const int Folds = 4;
Accord.Math.Random.Generator.Seed = 0;
string trainingFname = null;
string labelFname = null;
string modelFname = "NBmodel.sav"; // Default model file name
bool NoTrain = false;
Functions.Welcome();
int numArgs = Functions.parseCommandLine(args, maxargs, minargs);
if (numArgs == 0)
{
Console.WriteLine(Strings.resources.usage);
System.Environment.Exit(1);
}
if (numArgs == 2)
{
trainingFname = args[0];
labelFname = args[1];
}
if (numArgs == 3) // no use for third parameter yet!
{
if (args[2] == ("-s") | args[2] == ("-S"))
{
NoTrain = true;
trainingFname = args[0];
labelFname = args[1];
}
else
{
Console.WriteLine(Strings.resources.usage);
System.Environment.Exit(1);
}
}
if (numArgs == 4)
{
NoTrain = true;
trainingFname = args[0];
labelFname = args[1];
modelFname = args[3];
}
//
// Check if the training and label files exist and are not locked by anohter process
//
if (!Utility.Functions.checkFile(trainingFname))
{
Console.WriteLine("Error opening file{0}", trainingFname);
System.Environment.Exit(1);
}
if (!Functions.checkFile(labelFname))
{
Console.WriteLine("Error opening file {0}", labelFname);
System.Environment.Exit(1);
}
//
// Read in the training and label files, CSV format
//
CsvReader training_samples = new CsvReader(trainingFname, false);
int[,] MatrixIn = training_samples.ToMatrix <int>();
int[][] trainingset = Functions.convertToJaggedArray(MatrixIn);
//
// Naive Bayes gets trained on integer arrays or arrays of "strings"
//
CsvReader label_samples = new CsvReader(labelFname, false);
int[,] labelsIn = label_samples.ToMatrix <int>(); // COnvert the labels to a matrix and then to jagged array
int[][] LabelSet = Functions.convertToJaggedArray(labelsIn);
int[] output = Functions.convertTointArray(LabelSet);
NaiveBayes loaded_nb; // setup for loading a trained model if one exists
if (!NoTrain)
{
// Create a new Naive Bayes learning instance
var learner = new NaiveBayesLearning();
// Create a Naive Bayes classifier and train with the input datasets
NaiveBayes classifier = learner.Learn(trainingset, output);
/* Cross-validation is a technique for estimating the performance of a predictive model.
* It can be used to measure how the results of a statistical analysis will generalize to
* an independent data set. It is mainly used in settings where the goal is prediction, and
* one wants to estimate how accurately a predictive model will perform in practice.
*
* One round of cross-validation involves partitioning a sample of data into complementary
* subsets, performing the analysis on one subset (called the training set), and validating
* the analysis on the other subset (called the validation set or testing set). To reduce
* variability, multiple rounds of cross-validation are performed using different partitions,
* and the validation results are averaged over the rounds
*/
// Gets results based on performing a k-fold cross validation based on the input training set
// Create a cross validation instance
var cv = CrossValidation.Create(k: Folds, learner: (p) => new NaiveBayesLearning(),
loss: (actual, expected, p) => new ZeroOneLoss(expected).Loss(actual),
fit: (teacher, x, y, w) => teacher.Learn(x, y, w),
x: trainingset, y: output);
var result = cv.Learn(trainingset, output);
Console.WriteLine("Performing n-fold cross validation where n = {0}", cv.K);
// We can grab some information about the problem:
Console.WriteLine("Cross Validation Results");
Console.WriteLine(" number of samples {0}", result.NumberOfSamples);
Console.WriteLine(" number of features: {0}", result.NumberOfInputs);
Console.WriteLine(" number of outputs {0}", result.NumberOfOutputs);
Console.WriteLine(" Training Error: {0:n2}", result.Training.Mean); // should be 0 or no
Console.WriteLine(" Validation Mean: {0}\n", result.Validation.Mean);
Console.WriteLine("Creating General Confusion Matrix from Cross Validation");
GeneralConfusionMatrix gcm = result.ToConfusionMatrix(trainingset, output);
double accuracy = gcm.Accuracy; // should be 0.625
Console.WriteLine(" GCM Accuracy {0}%\n", accuracy * 100);
ConfusionMatrix cm = ConfusionMatrix.Estimate(classifier, trainingset, output);
Console.WriteLine("Confusion Error {0}", cm.Error);
Console.WriteLine("Confusion accuracy {0}", cm.Accuracy);
double tp = cm.TruePositives;
double tn = cm.TrueNegatives;
double fscore = cm.FScore;
double fp = cm.FalsePositives;
double fn = cm.FalseNegatives;
Console.WriteLine("TP = {0},TN = {1}, FP = {2}, FN = {3}, Fscore = {4} ", tp, tn, fp, fn, fscore);
// Save the model created from the training set
classifier.Save("NBmodel.sav", compression: SerializerCompression.None);
Console.WriteLine("Successfully saved the model");
}
else
{
// load a previous model
loaded_nb = Serializer.Load <NaiveBayes>(modelFname); // Load the model
int[] results = loaded_nb.Decide(trainingset); // Make preditions from the input
double accuracy = Functions.CalculateAccuraccy(output, results);
Console.WriteLine("Accuracy of predictions = {0}%", Math.Round(accuracy * 100, 2)); // Compare the predicions to the labels
}
}