static void Main(string[] args) { //Environnement variables var path = Environment.GetEnvironmentVariable("RD_AGGREGATOR_SETTINGS"); ConfigurationManager.Instance.Init(path); //TESTED AND DONE //Update Orphanet (diseases/real datasets) OrphaEngine orphaEngine = new OrphaEngine(); orphaEngine.Start(); //Retrieving diseases from DB List <Disease> lst_diseases = new List <Disease>(); using (var db = new MongoRepository.DiseaseRepository()) { lst_diseases = db.selectAll().Take(27).ToList(); //lst_diseases = db.selectAll(); } //TESTED AND DONE //Update Publications PubmedEngine pubmedEngine = new PubmedEngine(); Console.WriteLine("Starting requests at PMC this can take some time..."); pubmedEngine.Start2(lst_diseases); //Update number of publications per disease Console.WriteLine("Update number of publications per disease....."); using (var dbDisease = new MongoRepository.DiseaseRepository()) using (var dbPublication = new MongoRepository.PublicationRepository()) { //Update all diseases foreach (var disease in lst_diseases) { long numberPublications = dbPublication.countForOneDisease(disease.OrphaNumber); disease.NumberOfPublications = (int)numberPublications; dbDisease.updateDisease(disease); } } Console.WriteLine("Update number of publications per disease finished"); //Retrieving related entities by disease AND TextMine TextMiningEngine textMiningEngine = new TextMiningEngine(); RecupSymptomsAndTextMine(lst_diseases, textMiningEngine); //RecupLinkedDiseasesAndTextMine(lst_diseases, textMiningEngine); //RecupDrugsAndTextMine(lst_diseases, textMiningEngine); //Retrieving PredictionData and RealData from DB (DiseasesData with type Symptom) DiseasesData PredictionData = null; DiseasesData RealData = null; using (var dbPred = new MongoRepository.PredictionDataRepository()) using (var dbReal = new MongoRepository.RealDataRepository()) { PredictionData = dbPred.selectByType(type.Symptom); RealData = dbReal.selectByType(type.Symptom); } //Evaluation... if (PredictionData != null && RealData != null) { Evaluator.Evaluate(PredictionData, RealData); } Console.WriteLine("Finished :)"); Console.ReadLine(); }