static void Main(string[] args)
{
//Environnement variables
var path = Environment.GetEnvironmentVariable("RD_AGGREGATOR_SETTINGS");
ConfigurationManager.Instance.Init(path);
//TESTED AND DONE
//Update Orphanet (diseases/real datasets)
OrphaEngine orphaEngine = new OrphaEngine();
orphaEngine.Start();
//Retrieving diseases from DB
List <Disease> lst_diseases = new List <Disease>();
using (var db = new MongoRepository.DiseaseRepository())
{
lst_diseases = db.selectAll().Take(27).ToList();
//lst_diseases = db.selectAll();
}
//TESTED AND DONE
//Update Publications
PubmedEngine pubmedEngine = new PubmedEngine();
Console.WriteLine("Starting requests at PMC this can take some time...");
pubmedEngine.Start2(lst_diseases);
//Update number of publications per disease
Console.WriteLine("Update number of publications per disease.....");
using (var dbDisease = new MongoRepository.DiseaseRepository())
using (var dbPublication = new MongoRepository.PublicationRepository())
{
//Update all diseases
foreach (var disease in lst_diseases)
{
long numberPublications = dbPublication.countForOneDisease(disease.OrphaNumber);
disease.NumberOfPublications = (int)numberPublications;
dbDisease.updateDisease(disease);
}
}
Console.WriteLine("Update number of publications per disease finished");
//Retrieving related entities by disease AND TextMine
TextMiningEngine textMiningEngine = new TextMiningEngine();
RecupSymptomsAndTextMine(lst_diseases, textMiningEngine);
//RecupLinkedDiseasesAndTextMine(lst_diseases, textMiningEngine);
//RecupDrugsAndTextMine(lst_diseases, textMiningEngine);
//Retrieving PredictionData and RealData from DB (DiseasesData with type Symptom)
DiseasesData PredictionData = null;
DiseasesData RealData = null;
using (var dbPred = new MongoRepository.PredictionDataRepository())
using (var dbReal = new MongoRepository.RealDataRepository())
{
PredictionData = dbPred.selectByType(type.Symptom);
RealData = dbReal.selectByType(type.Symptom);
}
//Evaluation...
if (PredictionData != null && RealData != null)
{
Evaluator.Evaluate(PredictionData, RealData);
}
Console.WriteLine("Finished :)");
Console.ReadLine();
}
