protected override void Context()
{
base.Context();
_formulaCache = new FormulaCache();
_compoundFactory = IoC.Resolve <ICompoundFactory>();
_parameterAlternativeFactory = IoC.Resolve <IParameterAlternativeFactory>();
_compound = _compoundFactory.Create().WithName("Comp");
_compound.Parameter(Constants.Parameters.MOL_WEIGHT).Value = 250;
//Two simple parameters without alternatives
//one parameter defined as a constant for which an alternative was also specififed
var lipoGroup = _compound.ParameterAlternativeGroup(CoreConstants.Groups.COMPOUND_LIPOPHILICITY);
_alternativeLipo1 = _parameterAlternativeFactory.CreateAlternativeFor(lipoGroup).WithName("ALT_LIPO1").WithId("ALT_LIPO1");
_alternativeLipo1.Parameter(CoreConstants.Parameters.LIPOPHILICITY).Value = 2;
_alternativeLipo2 = _parameterAlternativeFactory.CreateAlternativeFor(lipoGroup).WithName("ALT_LIPO2").WithId("ALT_LIPO2");
_alternativeLipo2.Parameter(CoreConstants.Parameters.LIPOPHILICITY).Value = 5;
lipoGroup.AddAlternative(_alternativeLipo1);
lipoGroup.AddAlternative(_alternativeLipo2);
//one parameter defined as a formula with a default calculated alternative
var permAlternativeGroup = _compound.ParameterAlternativeGroup(CoreConstants.Groups.COMPOUND_PERMEABILITY);
//value cannot be changed by user
_alternativePerm1 = _parameterAlternativeFactory.CreateDefaultAlternativeFor(permAlternativeGroup).WithName("ALT_PERM1").WithId("ALT_PERM1");
_alternativePerm2 = _parameterAlternativeFactory.CreateAlternativeFor(permAlternativeGroup).WithName("ALT_PERM2").WithId("ALT_PERM2");
_alternativePerm2.Parameter(CoreConstants.Parameters.PERMEABILITY).Value = 10;
permAlternativeGroup.AddAlternative(_alternativePerm1);
permAlternativeGroup.AddAlternative(_alternativePerm2);
}
public override async Task <ParameterAlternative> MapToModel(Alternative snapshot, ParameterAlternativeGroup parameterAlternativeGroup)
{
var alternative = _parameterAlternativeFactory.CreateAlternativeFor(parameterAlternativeGroup);
alternative.IsDefault = ModelValueFor(snapshot.IsDefault, DEFAULT_IS_DEFAULT);
MapSnapshotPropertiesToModel(snapshot, alternative);
await UpdateParametersFromSnapshot(snapshot, alternative, parameterAlternativeGroup.Name);
if (parameterAlternativeGroup.IsNamed(CoreConstants.Groups.COMPOUND_SOLUBILITY))
{
updateSolubilityAlternative(alternative);
}
var alternativeWithSpecies = alternative as ParameterAlternativeWithSpecies;
if (alternativeWithSpecies == null)
{
return(alternative);
}
alternativeWithSpecies.Species = _speciesRepository.FindByName(snapshot.Species);
if (alternativeWithSpecies.Species == null)
{
throw new SnapshotOutdatedException(PKSimConstants.Error.CouldNotFindSpecies(snapshot.Species, _speciesRepository.AllNames()));
}
return(alternativeWithSpecies);
}
public ParameterAlternative CreateCompoundAlternative(Compound compound, string group, string alternativeName, double value, string parameterName, bool setDefault = true)
{
var alternativeGroup = compound.ParameterAlternativeGroup(group);
var alternative = _parameterAlternativeFactory.CreateAlternativeFor(alternativeGroup).WithName(alternativeName);
AddCommand(_compoundAlternativeTask.AddParameterGroupAlternativeTo(alternativeGroup, alternative));
AddCommand(_compoundAlternativeTask.SetAlternativeParameterValue(alternative.Parameter(parameterName), value));
if (setDefault)
{
AddCommand(_compoundAlternativeTask.SetDefaultAlternativeFor(alternativeGroup, alternative));
}
return(alternative);
}
public ICommand AddParameterGroupAlternativeTo(ParameterAlternativeGroup compoundParameterGroup)
{
var newParamGroupAlternative = _parameterAlternativeFactory.CreateAlternativeFor(compoundParameterGroup);
using (var presenter = _applicationController.Start <IParameterAlternativeNamePresenter>())
{
//canceled by user - nothing to do
if (!presenter.Edit(compoundParameterGroup))
{
return(new PKSimEmptyCommand());
}
newParamGroupAlternative.Name = presenter.Name;
newParamGroupAlternative.Description = presenter.Description;
return(AddParameterGroupAlternativeTo(compoundParameterGroup, newParamGroupAlternative));
}
}
public ParameterAlternative CreateAlternative(ParameterAlternativeGroup compoundParameterGroup, string name) => _parameterAlternativeFactory.CreateAlternativeFor(compoundParameterGroup).WithName(name);
