public CanvasEnrichmentCnvCaller(IWorkDoer workDoer, ILogger logger, IFileLocation canvasExe, IFileLocation runtimeExecutable,
ICanvasAnnotationFileProvider annotationFileProvider,
ICanvasSingleSampleInputCommandLineBuilder singleSampleInputCommandLineBuilder,
CanvasEnrichmentInputCreator <CanvasEnrichmentInput> enrichmentInputCreator,
CanvasPloidyVcfCreator canvasPloidyVcfCreator)
{
_workDoer = workDoer;
_logger = logger;
_canvasExe = canvasExe;
_runtimeExecutable = runtimeExecutable;
_annotationFileProvider = annotationFileProvider;
_singleSampleInputCommandLineBuilder = singleSampleInputCommandLineBuilder;
_enrichmentInputCreator = enrichmentInputCreator;
_canvasPloidyVcfCreator = canvasPloidyVcfCreator;
}
public CanvasSmallPedigreeWrapper(
IWorkManager workManager,
ILogger logger,
IFileLocation canvasExe, IFileLocation runtimeExecutable,
ICanvasAnnotationFileProvider annotationFileProvider,
ICanvasSingleSampleInputCommandLineBuilder singleSampleInputCommandLineBuilder,
CanvasPloidyVcfCreator canvasPloidyVcfCreator)
{
_workManager = workManager;
_logger = logger;
_canvasExe = canvasExe;
_annotationFileProvider = annotationFileProvider;
_singleSampleInputCommandLineBuilder = singleSampleInputCommandLineBuilder;
_canvasPloidyVcfCreator = canvasPloidyVcfCreator;
_runtimeExecutable = runtimeExecutable;
}
public CanvasTumorNormalWgsCnvCaller(
IWorkManager workManager,
ILogger logger,
IFileLocation canvasExe, IFileLocation runtimeExecutable,
ICanvasAnnotationFileProvider annotationFileProvider,
ICanvasSingleSampleInputCommandLineBuilder singleSampleInputCommandLineBuilder,
CanvasPloidyBedCreator canvasPloidyBedCreator)
{
_workManager = workManager;
_logger = logger;
_canvasExe = canvasExe;
_annotationFileProvider = annotationFileProvider;
_singleSampleInputCommandLineBuilder = singleSampleInputCommandLineBuilder;
_canvasPloidyBedCreator = canvasPloidyBedCreator;
_runtimeExecutable = runtimeExecutable;
}