public Aglomerative(HierarchicalCInput obj, ClusterAlgorithm alg, INPUTMODE mode, bool flag, List <string> profiles) { InitializeComponent(); Settings set = new Settings(); set.Load(); switch (set.mode) { case INPUTMODE.RNA: distanceControl1.HideAtoms = true; break; case INPUTMODE.USER_DEFINED: distanceControl1.HideRmsdLike = true; break; } foreach (var item in Enum.GetValues(typeof(AglomerativeType))) { comboBox1.Items.Add(Enum.GetName(typeof(AglomerativeType), item)); } if (obj != null) { comboBox1.SelectedItem = Enum.GetName(typeof(AglomerativeType), obj.linkageType); distanceControl1.reference = obj.reference1DjuryH; distanceControl1.referenceProfile = obj.jury1DProfileH; distanceControl1.distDef = obj.distance; distanceControl1.CAtoms = obj.atoms; distanceControl1.profileName = obj.hammingProfile; } }
private void SetOptions() { localOpt = new HierarchicalCInput(); localOpt.linkageType = (AglomerativeType)Enum.Parse(typeof(AglomerativeType), comboBox1.SelectedItem.ToString()); alg = ClusterAlgorithm.HierarchicalCluster; if (distanceControl1.distDef == DistanceMeasures.RMSD || distanceControl1.distDef == DistanceMeasures.MAXSUB || distanceControl1.distDef == DistanceMeasures.GDT_TS) { localOpt.reference1DjuryH = false; } else { string hammingProfile = distanceControl1.profileName; localOpt.hammingProfile = hammingProfile; localOpt.reference1DjuryAglom = distanceControl1.reference; localOpt.jury1DProfileAglom = hammingProfile.Replace("_distance", ""); if (!localOpt.jury1DProfileAglom.Contains(".profiles")) { localOpt.jury1DProfileAglom = localOpt.jury1DProfileAglom.Replace(".profile", ".profiles"); } } localOpt.distance = distanceControl1.distDef; localOpt.atoms = distanceControl1.CAtoms; }
public HierarchicalCForm(Options opt, ClusterAlgorithm alg, INPUTMODE mode, bool flag, List <string> profiles) { HierarchicalCInput obj = opt.hierarchical; this.alg = alg; objCopy = obj; this.mode = mode; InitializeComponent(); if (profiles != null) { button3.Visible = true; profileFile = profiles[0]; } else { button3.Visible = false; } userHash1.regularizationOff(); SizeHeight = this.Size.Height; distanceControl1.refChanged = ReferanceCheckChanged; //distanceControl1.FreezeCAtoms(); Settings set = new Settings(); set.Load(); if (set.mode == INPUTMODE.RNA) { distanceControl1.HideAtoms = true; } foreach (var item in Enum.GetValues(typeof(AglomerativeType))) { comboBox1.Items.Add(Enum.GetName(typeof(AglomerativeType), item)); } if (obj != null) { comboBox1.SelectedItem = Enum.GetName(typeof(AglomerativeType), obj.linkageType); numericBox1.Text = obj.numInitNodes.ToString(); DBIndex.Value = (decimal)obj.indexDB; threshold.Value = (decimal)obj.numberOfStruct; maxRepeat.Value = (decimal)obj.repeatTime; maxK.Value = (decimal)obj.maxK; switch (alg) { case ClusterAlgorithm.FastHCluster: AglomRadio.Checked = false; FastHClusterRadio.Checked = true; KmeansRadio.Checked = false; userHash1.Visible = false; radioButton3.Checked = false; groupBox1.Visible = true; if (radioButton1.Checked) { if (distanceControl1.reference) { jury1DSetup3.Visible = false; } else { jury1DSetup3.Visible = true; } } this.Size = new Size(this.Size.Width, SizeHeight / 2 + SizeHeight / 4); distanceControl1.reference = obj.reference1DjuryFast; distanceControl1.referenceProfile = obj.consensusProfile; userHash1.profRefFile = obj.jury1DProfileFast; break; case ClusterAlgorithm.HKmeans: AglomRadio.Checked = false; FastHClusterRadio.Checked = false; KmeansRadio.Checked = true; groupBox1.Visible = false; radioButton3.Checked = false; userHash1.Visible = false; this.Size = new Size(this.Size.Width, SizeHeight / 2 + SizeHeight / 3); distanceControl1.reference = obj.reference1DjuryKmeans; distanceControl1.referenceProfile = obj.jury1DProfileKmeans; break; case ClusterAlgorithm.uQlustTree: userHash1.Visible = true; AglomRadio.Checked = false; FastHClusterRadio.Checked = false; KmeansRadio.Checked = false; groupBox1.Visible = false; radioButton3.Checked = true; this.Size = new Size(this.Size.Width, SizeHeight); distanceControl1.reference = obj.reference1DjuryH; distanceControl1.referenceProfile = obj.jury1DProfileH; break; default: //Aglomerative AglomRadio.Checked = true; FastHClusterRadio.Checked = false; KmeansRadio.Checked = false; groupBox1.Visible = false; userHash1.Visible = false; radioButton3.Checked = false; distanceControl1.reference = obj.reference1DjuryAglom; distanceControl1.referenceProfile = obj.jury1DProfileAglom; break; } distanceControl1.distDef = obj.distance; distanceControl1.CAtoms = obj.atoms; distanceControl1.profileName = obj.hammingProfile; jury1DSetup3.profileName = obj.consensusProfile; checkBox2.Checked = obj.ItMeans; numericUpDown1.Value = obj.ItNum; if (obj.HConsensus) { radioButton1.Checked = false; radioButton2.Checked = true; } else { radioButton1.Checked = true; radioButton2.Checked = false; } if (flag) { distanceControl1.FreezDist(); // distanceControl1.distDef = DistanceMeasures.HAMMING; } // distanceControl1.CAtoms = PDB.PDBMODE.ONLY_CA; userHash1.SetHash(opt.hash); } }