public Aglomerative(HierarchicalCInput obj, ClusterAlgorithm alg, INPUTMODE mode, bool flag, List <string> profiles)
{
InitializeComponent();
Settings set = new Settings();
set.Load();
switch (set.mode)
{
case INPUTMODE.RNA:
distanceControl1.HideAtoms = true;
break;
case INPUTMODE.USER_DEFINED:
distanceControl1.HideRmsdLike = true;
break;
}
foreach (var item in Enum.GetValues(typeof(AglomerativeType)))
{
comboBox1.Items.Add(Enum.GetName(typeof(AglomerativeType), item));
}
if (obj != null)
{
comboBox1.SelectedItem = Enum.GetName(typeof(AglomerativeType), obj.linkageType);
distanceControl1.reference = obj.reference1DjuryH;
distanceControl1.referenceProfile = obj.jury1DProfileH;
distanceControl1.distDef = obj.distance;
distanceControl1.CAtoms = obj.atoms;
distanceControl1.profileName = obj.hammingProfile;
}
}
private void SetOptions()
{
localOpt = new HierarchicalCInput();
localOpt.linkageType = (AglomerativeType)Enum.Parse(typeof(AglomerativeType), comboBox1.SelectedItem.ToString());
alg = ClusterAlgorithm.HierarchicalCluster;
if (distanceControl1.distDef == DistanceMeasures.RMSD || distanceControl1.distDef == DistanceMeasures.MAXSUB || distanceControl1.distDef == DistanceMeasures.GDT_TS)
{
localOpt.reference1DjuryH = false;
}
else
{
string hammingProfile = distanceControl1.profileName;
localOpt.hammingProfile = hammingProfile;
localOpt.reference1DjuryAglom = distanceControl1.reference;
localOpt.jury1DProfileAglom = hammingProfile.Replace("_distance", "");
if (!localOpt.jury1DProfileAglom.Contains(".profiles"))
{
localOpt.jury1DProfileAglom = localOpt.jury1DProfileAglom.Replace(".profile", ".profiles");
}
}
localOpt.distance = distanceControl1.distDef;
localOpt.atoms = distanceControl1.CAtoms;
}
public HierarchicalCForm(Options opt, ClusterAlgorithm alg, INPUTMODE mode, bool flag, List <string> profiles)
{
HierarchicalCInput obj = opt.hierarchical;
this.alg = alg;
objCopy = obj;
this.mode = mode;
InitializeComponent();
if (profiles != null)
{
button3.Visible = true;
profileFile = profiles[0];
}
else
{
button3.Visible = false;
}
userHash1.regularizationOff();
SizeHeight = this.Size.Height;
distanceControl1.refChanged = ReferanceCheckChanged;
//distanceControl1.FreezeCAtoms();
Settings set = new Settings();
set.Load();
if (set.mode == INPUTMODE.RNA)
{
distanceControl1.HideAtoms = true;
}
foreach (var item in Enum.GetValues(typeof(AglomerativeType)))
{
comboBox1.Items.Add(Enum.GetName(typeof(AglomerativeType), item));
}
if (obj != null)
{
comboBox1.SelectedItem = Enum.GetName(typeof(AglomerativeType), obj.linkageType);
numericBox1.Text = obj.numInitNodes.ToString();
DBIndex.Value = (decimal)obj.indexDB;
threshold.Value = (decimal)obj.numberOfStruct;
maxRepeat.Value = (decimal)obj.repeatTime;
maxK.Value = (decimal)obj.maxK;
switch (alg)
{
case ClusterAlgorithm.FastHCluster:
AglomRadio.Checked = false;
FastHClusterRadio.Checked = true;
KmeansRadio.Checked = false;
userHash1.Visible = false;
radioButton3.Checked = false;
groupBox1.Visible = true;
if (radioButton1.Checked)
{
if (distanceControl1.reference)
{
jury1DSetup3.Visible = false;
}
else
{
jury1DSetup3.Visible = true;
}
}
this.Size = new Size(this.Size.Width, SizeHeight / 2 + SizeHeight / 4);
distanceControl1.reference = obj.reference1DjuryFast;
distanceControl1.referenceProfile = obj.consensusProfile;
userHash1.profRefFile = obj.jury1DProfileFast;
break;
case ClusterAlgorithm.HKmeans:
AglomRadio.Checked = false;
FastHClusterRadio.Checked = false;
KmeansRadio.Checked = true;
groupBox1.Visible = false;
radioButton3.Checked = false;
userHash1.Visible = false;
this.Size = new Size(this.Size.Width, SizeHeight / 2 + SizeHeight / 3);
distanceControl1.reference = obj.reference1DjuryKmeans;
distanceControl1.referenceProfile = obj.jury1DProfileKmeans;
break;
case ClusterAlgorithm.uQlustTree:
userHash1.Visible = true;
AglomRadio.Checked = false;
FastHClusterRadio.Checked = false;
KmeansRadio.Checked = false;
groupBox1.Visible = false;
radioButton3.Checked = true;
this.Size = new Size(this.Size.Width, SizeHeight);
distanceControl1.reference = obj.reference1DjuryH;
distanceControl1.referenceProfile = obj.jury1DProfileH;
break;
default: //Aglomerative
AglomRadio.Checked = true;
FastHClusterRadio.Checked = false;
KmeansRadio.Checked = false;
groupBox1.Visible = false;
userHash1.Visible = false;
radioButton3.Checked = false;
distanceControl1.reference = obj.reference1DjuryAglom;
distanceControl1.referenceProfile = obj.jury1DProfileAglom;
break;
}
distanceControl1.distDef = obj.distance;
distanceControl1.CAtoms = obj.atoms;
distanceControl1.profileName = obj.hammingProfile;
jury1DSetup3.profileName = obj.consensusProfile;
checkBox2.Checked = obj.ItMeans;
numericUpDown1.Value = obj.ItNum;
if (obj.HConsensus)
{
radioButton1.Checked = false;
radioButton2.Checked = true;
}
else
{
radioButton1.Checked = true;
radioButton2.Checked = false;
}
if (flag)
{
distanceControl1.FreezDist();
// distanceControl1.distDef = DistanceMeasures.HAMMING;
}
// distanceControl1.CAtoms = PDB.PDBMODE.ONLY_CA;
userHash1.SetHash(opt.hash);
}
}
