/// <summary> /// Constructor with cmd arg /// </summary> /// <param name="argCollection">Command Arguments</param> public DistributableWrapper(CommandArguments argCollection) { _argCollection = argCollection; _argCollection.ExtractOptional <int>("TaskCount", -1); // get rid of this, because it will be added again later. _argCollection.ExtractOptional <RangeCollection>("Tasks", null); // get rid of this, because it will be added again later. _argCollection.ExtractOptional <bool>("Cleanup", true); // get rid of this, because it will be added again later. }
public static void Main(string[] args) { //SpecialFunctions.CheckDate(2010, 4, 16); //double[][] ragged = new double[][]{new double[]{1,2,3},new double[]{4,5,6}}; //TestIt(ragged); //double[,] twoD = new double[,] {{ 1, 2, 3 },{ 4, 5, 6 } }; ////TestIt(twoD);Nope //var sparse = SparseMatrix<string, string, double>.CreateEmptyInstance(new[] { "key1", "key2" }, new[] { "cid1" }, double.NaN); //TestIt(sparse); ////BioMatrixSample.BioMatrixSample.DemoMatrix(Console.Out); ////Bio.Matrix.MatrixUnitTest.MainTest(doOutOfRangeTest: true, parallelOptions: new ParallelOptions { MaxDegreeOfParallelism = Environment.ProcessorCount }); //return; Console.WriteLine(Environment.MachineName); Console.WriteLine(Helper.CreateDelimitedString(" ", args)); try { ShoUtils.SetShoDirEnvironmentVariable(1); ArgumentCollection argumentCollection = new CommandArguments(args); if (argumentCollection.ExtractOptionalFlag("help")) { Console.WriteLine(""); Console.WriteLine(UsageMessage); return; } bool useCorrel = argumentCollection.ExtractOptionalFlag("correl"); //bool doubleUp = argCollection.ExtractOptionalFlag("doubleUp"); ParallelOptions parallelOptions = new ParallelOptions { MaxDegreeOfParallelism = argumentCollection.ExtractOptional("MaxDegreeOfParallelism", Environment.ProcessorCount) }; int randomSeed = argumentCollection.ExtractOptional <int>("randomSeed", (int)MachineInvariantRandom.GetSeedUInt("Eigenstrat")); int?randomRowCountOrNull = argumentCollection.ExtractOptional <int?>("randomRowCount", null); argumentCollection.CheckNoMoreOptions(3); int maxValue = argumentCollection.ExtractNext <int>("maxValue"); string inputDenseFileName = argumentCollection.ExtractNext <string>("inputDenseFile"); string outputCovFileName = argumentCollection.ExtractNext <string>("outputCovFile"); argumentCollection.CheckThatEmpty(); Console.WriteLine("Reading input file " + inputDenseFileName); //var originalMatrix = MatrixFactorySSC.Parse(inputDenseFileName, '?', parallelOptions); Console.WriteLine("Using 'GetInstanceFromDenseAnsi' How about 'GetInstanceFromRowKeysAnsi', too?"); using (var originalMatrix = RowKeysAnsi.GetInstanceFromDenseAnsi(inputDenseFileName, parallelOptions)) { Matrix <string, string, char> matrixOptionallyCutDown; if (null != randomRowCountOrNull) { Random random = new Random(randomSeed); var sampleRowKeys = SpecialFunctions.SelectRandom(originalMatrix.RowKeys, randomRowCountOrNull.Value, ref random); matrixOptionallyCutDown = originalMatrix.SelectRowsView(sampleRowKeys); } else { matrixOptionallyCutDown = originalMatrix; } var gMatrix = matrixOptionallyCutDown.ConvertValueView(new CharToDoubleWithLimitsConverter(maxValue), double.NaN); //DenseMatrix<string, string, double>.CreateDefaultInstance var xMatrix = StandardizeGToCreateX <ShoMatrix>(maxValue, gMatrix, ShoMatrix.CreateDefaultInstance, parallelOptions); var psiMatrix = CreatePsiTheMatrixOfCovarianceValues(useCorrel, xMatrix, /*isOKToDestroyXMatrix*/ true, parallelOptions); Console.WriteLine("Writing output file " + outputCovFileName); psiMatrix.WriteDense(outputCovFileName); } } catch (Exception exception) { Console.WriteLine(""); Console.WriteLine(exception.Message); if (exception.InnerException != null) { Console.WriteLine(exception.InnerException.Message); } Console.WriteLine(""); Console.WriteLine(UsageMessage); Console.WriteLine(exception.StackTrace); throw new Exception("", exception); } }