Esempio n. 1
0
        public static void GenerateOther()//generating from other files
        {
            Console.Clear();
            Console.WriteLine("enter newick file location");
            string newick = System.IO.File.ReadAllText(Console.ReadLine());

            Console.Clear();
            NewickReader n    = new NewickReader();
            Tree         tree = n.Read(newick);


            Console.WriteLine("enter assinment file location");
            string[] lines = System.IO.File.ReadAllLines(Console.ReadLine());


            for (int i = 0; i < lines.Length; i++)
            {
                lines[i] = lines[i].Replace("\t", "");
            }

            foreach (Node node in tree.nodeList)
            {
                if (node.name != "")
                {
                    node.name = lines[Convert.ToInt32(node.name) - 1];
                }
            }
            tree.root.name = "root";
            tree.LayoutPosition2();
            Console.WriteLine(tree.Print());
            Console.ReadLine();
        }
Esempio n. 2
0
        public static void NewickGenerate()
        {
            Console.Clear();
            Console.WriteLine("enter newick file location");
            string newick = System.IO.File.ReadAllText(Console.ReadLine());

            Console.Clear();
            NewickReader n    = new NewickReader();
            Tree         tree = n.Read(newick);

            tree.root.name = "root";
            tree.LayoutPosition2();
            Console.WriteLine(tree.Print());
            Console.ReadLine();
        }