public FireEffects(int numberOfSeverities)
{
ReductionsTable = new FireReductions[numberOfSeverities + 1]; //will ignore zero
for (int i = 0; i <= numberOfSeverities; i++)
{
ReductionsTable[i] = new FireReductions();
}
}
//---------------------------------------------------------------------
protected override IInputParameters Parse()
{
ReadLandisDataVar();
InputParameters parameters = new InputParameters();
InputVar <int> timestep = new InputVar <int>(Names.Timestep);
ReadVar(timestep);
parameters.Timestep = timestep.Value;
InputVar <SeedingAlgorithms> seedAlg = new InputVar <SeedingAlgorithms>(Names.SeedingAlgorithm);
ReadVar(seedAlg);
parameters.SeedAlgorithm = seedAlg.Value;
//---------------------------------------------------------------------------------
InputVar <string> initCommunities = new InputVar <string>("InitialCommunities");
ReadVar(initCommunities);
parameters.InitialCommunities = initCommunities.Value;
InputVar <string> communitiesMap = new InputVar <string>("InitialCommunitiesMap");
ReadVar(communitiesMap);
parameters.InitialCommunitiesMap = communitiesMap.Value;
InputVar <string> climateConfigFile = new InputVar <string>(Names.ClimateConfigFile);
if (ReadOptionalVar(climateConfigFile))
{
parameters.ClimateConfigFile = climateConfigFile.Value;
}
else
{
parameters.ClimateConfigFile = null;
}
//---------------------------------------------------------------------------------
InputVar <bool> calimode = new InputVar <bool>(Names.CalibrateMode);
if (ReadOptionalVar(calimode))
{
parameters.CalibrateMode = calimode.Value;
}
else
{
parameters.CalibrateMode = false;
}
InputVar <double> spinMort = new InputVar <double>("SpinupMortalityFraction");
if (ReadOptionalVar(spinMort))
{
parameters.SpinupMortalityFraction = spinMort.Value;
}
else
{
parameters.SpinupMortalityFraction = 0.0;
}
//--------------------------
// MinRelativeBiomass table
ReadName("MinRelativeBiomass");
const string SufficientLight = "SufficientLight";
List <IEcoregion> ecoregions = ReadEcoregions();
string lastEcoregion = ecoregions[ecoregions.Count - 1].Name;
InputVar <byte> shadeClassVar = new InputVar <byte>("Shade Class");
for (byte shadeClass = 1; shadeClass <= 5; shadeClass++)
{
if (AtEndOfInput)
{
throw NewParseException("Expected a line with shade class {0}", shadeClass);
}
StringReader currentLine = new StringReader(CurrentLine);
ReadValue(shadeClassVar, currentLine);
if (shadeClassVar.Value.Actual != shadeClass)
{
throw new InputValueException(shadeClassVar.Value.String,
"Expected the shade class {0}", shadeClass);
}
foreach (IEcoregion ecoregion in ecoregions)
{
InputVar <Percentage> MinRelativeBiomass = new InputVar <Percentage>("Ecoregion " + ecoregion.Name);
ReadValue(MinRelativeBiomass, currentLine);
parameters.SetMinRelativeBiomass(shadeClass, ecoregion, MinRelativeBiomass.Value);
}
CheckNoDataAfter("the Ecoregion " + lastEcoregion + " column",
currentLine);
GetNextLine();
}
//----------------------------------------------------------
// Read table of sufficient light probabilities.
// Shade classes are in increasing order.
ReadName(SufficientLight);
const string SpeciesParameters = "SpeciesParameters";
InputVar <byte> sc = new InputVar <byte>("Shade Class");
InputVar <double> pl0 = new InputVar <double>("Probability of Germination - Light Level 0");
InputVar <double> pl1 = new InputVar <double>("Probability of Germination - Light Level 1");
InputVar <double> pl2 = new InputVar <double>("Probability of Germination - Light Level 2");
InputVar <double> pl3 = new InputVar <double>("Probability of Germination - Light Level 3");
InputVar <double> pl4 = new InputVar <double>("Probability of Germination - Light Level 4");
InputVar <double> pl5 = new InputVar <double>("Probability of Germination - Light Level 5");
int previousNumber = 0;
while (!AtEndOfInput && CurrentName != SpeciesParameters &&
previousNumber != 6)
{
StringReader currentLine = new StringReader(CurrentLine);
ISufficientLight suffLight = new SufficientLight();
parameters.LightClassProbabilities.Add(suffLight);
ReadValue(sc, currentLine);
suffLight.ShadeClass = sc.Value;
// Check that the current shade class is 1 more than
// the previous number (numbers are must be in increasing order).
if (sc.Value.Actual != (byte)previousNumber + 1)
{
throw new InputValueException(sc.Value.String,
"Expected the severity number {0}",
previousNumber + 1);
}
previousNumber = (int)sc.Value.Actual;
ReadValue(pl0, currentLine);
suffLight.ProbabilityLight0 = pl0.Value;
ReadValue(pl1, currentLine);
suffLight.ProbabilityLight1 = pl1.Value;
ReadValue(pl2, currentLine);
suffLight.ProbabilityLight2 = pl2.Value;
ReadValue(pl3, currentLine);
suffLight.ProbabilityLight3 = pl3.Value;
ReadValue(pl4, currentLine);
suffLight.ProbabilityLight4 = pl4.Value;
ReadValue(pl5, currentLine);
suffLight.ProbabilityLight5 = pl5.Value;
CheckNoDataAfter("the " + pl5.Name + " column",
currentLine);
GetNextLine();
}
if (parameters.LightClassProbabilities.Count == 0)
{
throw NewParseException("No sufficient light probabilities defined.");
}
if (previousNumber != 5)
{
throw NewParseException("Expected shade class {0}", previousNumber + 1);
}
//-------------------------
// SpeciesParameters table
ReadName("SpeciesParameters");
const string EcoregionParameters = "EcoregionParameters";
speciesLineNums.Clear(); // If parser re-used (i.e., for testing purposes)
InputVar <double> leafLongevity = new InputVar <double>("Leaf Longevity");
InputVar <double> woodyDecayRate = new InputVar <double>("Woody Decay Rate");
InputVar <double> mortCurveShapeParm = new InputVar <double>("Mortality Curve Shape Parameter");
InputVar <double> growthCurveShapeParm = new InputVar <double>("Mortality Curve Shape Parameter");
InputVar <double> leafLignin = new InputVar <double>("Leaf Percent Lignin");
InputVar <double> maxlai = new InputVar <double>("Maximum LAI");
InputVar <double> lec = new InputVar <double>("Light extinction coefficient");
InputVar <double> pctBio = new InputVar <double>("Pct Biomass Max LAI");
//string lastColumn = "the " + mortCurveShapeParm.Name + " column";
while (!AtEndOfInput && CurrentName != EcoregionParameters)
{
StringReader currentLine = new StringReader(CurrentLine);
ISpecies species = ReadSpecies(currentLine);
ReadValue(leafLongevity, currentLine);
parameters.SetLeafLongevity(species, leafLongevity.Value);
ReadValue(woodyDecayRate, currentLine);
parameters.SetWoodyDecayRate(species, woodyDecayRate.Value);
ReadValue(mortCurveShapeParm, currentLine);
parameters.SetMortCurveShapeParm(species, mortCurveShapeParm.Value);
ReadValue(growthCurveShapeParm, currentLine);
parameters.SetGrowthCurveShapeParm(species, growthCurveShapeParm.Value);
ReadValue(leafLignin, currentLine);
parameters.SetLeafLignin(species, leafLignin.Value);
CheckNoDataAfter(leafLignin.Name, currentLine);
GetNextLine();
}
ReadName("EcoregionParameters");
InputVar <string> ecoregionName = new InputVar <string>("Ecoregion Name");
InputVar <int> aet = new InputVar <int>("Actual Evapotranspiration");
Dictionary <string, int> lineNumbers = new Dictionary <string, int>();
string lastColumn = "the " + aet.Name + " column";
while (!AtEndOfInput && CurrentName != Names.DynamicInputFile)
{
StringReader currentLine = new StringReader(CurrentLine);
ReadValue(ecoregionName, currentLine);
IEcoregion ecoregion = GetEcoregion(ecoregionName.Value,
lineNumbers);
ReadValue(aet, currentLine);
parameters.SetAET(ecoregion, aet.Value);
CheckNoDataAfter(lastColumn, currentLine);
GetNextLine();
}
InputVar <string> dynInputFile = new InputVar <string>(Names.DynamicInputFile);
ReadVar(dynInputFile);
parameters.DynamicInputFile = dynInputFile.Value;
//--------- Read In Fire Reductions Table ---------------------------
PlugIn.ModelCore.UI.WriteLine(" Begin reading FIRE REDUCTION parameters.");
ReadName(Names.FireReductionParameters);
InputVar <int> frindex = new InputVar <int>("Fire Severity Index MUST = 1-5");
InputVar <double> wred = new InputVar <double>("Coarse Litter Reduction");
InputVar <double> lred = new InputVar <double>("Fine Litter Reduction");
//InputVar<double> som_red = new InputVar<double>("SOM Reduction");
while (!AtEndOfInput && CurrentName != Names.HarvestReductionParameters)
{
StringReader currentLine = new StringReader(CurrentLine);
ReadValue(frindex, currentLine);
int ln = (int)frindex.Value.Actual;
if (ln < 1 || ln > 5)
{
throw new InputValueException(frindex.Value.String,
"The fire severity index: {0} must be 1-5,",
frindex.Value.String);
}
FireReductions inputFireReduction = new FireReductions(); // ignoring severity = zero
parameters.FireReductionsTable[ln] = inputFireReduction;
ReadValue(wred, currentLine);
inputFireReduction.CoarseLitterReduction = wred.Value;
ReadValue(lred, currentLine);
inputFireReduction.FineLitterReduction = lred.Value;
//ReadValue(som_red, currentLine);
//inputFireReduction.SOMReduction = som_red.Value;
CheckNoDataAfter("the " + lred.Name + " column", currentLine);
GetNextLine();
}
//--------- Read In Harvest Reductions Table ---------------------------
InputVar <string> hreds = new InputVar <string>("HarvestReductions");
ReadName(Names.HarvestReductionParameters);
PlugIn.ModelCore.UI.WriteLine(" Begin reading HARVEST REDUCTION parameters.");
InputVar <string> prescriptionName = new InputVar <string>("Prescription");
InputVar <double> wred_pr = new InputVar <double>("Coarse Litter Reduction");
InputVar <double> lred_pr = new InputVar <double>("Fine Litter Reduction");
//InputVar<double> som_red_pr = new InputVar<double>("SOM Reduction");
InputVar <double> cohortw_red_pr = new InputVar <double>("Cohort Wood Removal");
InputVar <double> cohortl_red_pr = new InputVar <double>("Cohort Leaf Removal");
while (!AtEndOfInput)
{
StringReader currentLine = new StringReader(CurrentLine);
HarvestReductions harvReduction = new HarvestReductions();
parameters.HarvestReductionsTable.Add(harvReduction);
ReadValue(prescriptionName, currentLine);
harvReduction.PrescriptionName = prescriptionName.Value;
ReadValue(wred_pr, currentLine);
harvReduction.CoarseLitterReduction = wred_pr.Value;
ReadValue(lred_pr, currentLine);
harvReduction.FineLitterReduction = lred_pr.Value;
ReadValue(cohortw_red_pr, currentLine);
harvReduction.CohortWoodReduction = cohortw_red_pr.Value;
ReadValue(cohortl_red_pr, currentLine);
harvReduction.CohortLeafReduction = cohortl_red_pr.Value;
GetNextLine();
}
//string lastParameter = null;
//if (! AtEndOfInput && CurrentName == Names.AgeOnlyDisturbanceParms) {
// InputVar<string> ageOnlyDisturbanceParms = new InputVar<string>(Names.AgeOnlyDisturbanceParms);
// ReadVar(ageOnlyDisturbanceParms);
// parameters.AgeOnlyDisturbanceParms = ageOnlyDisturbanceParms.Value;
// lastParameter = "the " + Names.AgeOnlyDisturbanceParms + " parameter";
//}
//if (lastParameter != null)
// CheckNoDataAfter(lastParameter);
return(parameters);
}